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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS29P14
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr7:40242877-40243161  UCSC
Strand +
Parental Sequence NM_001133962.2
Parental seq. overlap 242 bp
Parental seq. overlap (%) 82.6%
Genomic Region Intragenic (NT5C3A)
Retrocopy Summary RPS29P14, located on chr7:40242877-40243161, is a retrocopy of the parental gene RPS29. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS29
Full Name N/A
Also known as -
Coordinate chr14:30894995-30916372
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS29P14
Chimpanzee Pan troglodytes RPS29P15
Bonobo Pan paniscus RPS29P14
Gorilla Gorilla gorilla RPS29P16
Gibbon Nomascus leucogenys RPS29P22
Green monkey Chlorocebus sabaeus RPS29P23
Crab-eating macaque Macaca fascicularis RPS29P8
Rhesus Macaca mulatta RPS29P8
Baboon Papio anubis RPS29P5
Golden snub-nosed monkey Rhinopithecus roxellana RPS29P27
Marmoset Callithrix jacchus RPS29P15
Pale spear-nosed bat Phyllostomus discolor RPL36AP42
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS29P14
GCTTTTGCCTCATTGCACTCTCGAAAGCAAGATGGGTCACCAGCAGCCCTACTGGAGCCACCCAGGGAAGTTGGGCCAGGGTTCTCGCTCTTGTCACATCTGCCCAAACCAGCATAGTCTGATCTAGAAACACGGCCTCAATATGTGCCACCAGTGTTTCCATCAGTACTCGAAGGACATAAGTTTCATTGAGTTGGACTAAGTGATCTTCCTTGAATGGATTATCCAAGGCATCCACCCAATGAAAGAAACCATGTTAGTTCTTTTTACATAAAATAAACATTT
>NM_001133962.2
CTTTTACCTCGTTGCACTGCTGAGAGCAAGATGGGTCACCAGCAGCTGTACTGGAGCCACCCGCGAAAATTCGGCCAGGGTTCTCGCTCTTGTCGCGTCTGTTCAAACCGGCACGGTCTGATCCGGAAATATGGCCTCAATATGTGCCGCCAGTGTTTCCGTCAGTACGCGAAGGATATCGGTTTCATTAAGTTGGACTAAATGATCTTCCTTCAGAGGATTATCCGAGGCATCTACTCAGTGAAAAACCATGATAATTCTTTGTACATAAAATAAACATTTGAAAAAA

Publications

PMID - Link Title