Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC117798565P1
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr-alt-023203105.1). Each line represents a retrocopy.
Species Ailuropoda melanoleuca
Coordinates chr17:10084535-10085191  UCSC
Strand -
Parental Sequence XM_034651011.1
Parental seq. overlap 479 bp
Parental seq. overlap (%) 63.8%
Genomic Region Intergenic
Retrocopy Summary LOC117798565P1, located on chr17:10084535-10085191, is a retrocopy of the parental gene LOC117798565. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC117798565
Full Name N/A
Also known as NULL
Coordinate chr-alt-023203105.1:156-1168
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse lemur Microcebus murinus UBA52P6
Rat Rattus norvegicus Rps27aP20
Rabbit Oryctolagus cuniculus LOC100348379P17
Pig Sus scrofa RPS27AP8
Cow Bos taurus UBA52P6
Sheep Ovis aries UBA52P5
Dolphin Tursiops truncatus UBA52P4
Horse Equus caballus UBA52P6
Dog Canis familiaris UBA52P4
Cat Felis catus UBA52P16
Pale spear-nosed bat Phyllostomus discolor UBA52P29
Greater horseshoe bat Rhinolophus ferrumequinum UBCP1
Egyptian rousette Rousettus aegyptiacus UBA52P9
Sloth Choloepus didactylus UBA52P9
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC117798565P1
ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGCATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGCATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACTCTC
>XM_034651011.1
ATGCAGATCTTCGTGAAAACGCTGACGGGGAAAACCATCACCCTCGAGGTTGAACCATCTGATACTATAGAAAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAACAGCGTTTAATTTTTGCTGGCAAACAATTGGAGGATGGACGTACTCTGTCTGATTATAACATCCAGAAGGAGTCTACTCTTCATCTTGTACTGAGACTTCGTGGTGGCATGCAGATCTTCGTGAAAACCCTGACGGGGAAAACCATTACCCTCGAGGTTGAACCATCTGATACTATAGAAAATGTCAAAGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAACAGCGTTTAATTTTTGCTGGCAAACAATTGGAGGATGGACGTACTCTGTCTGATTATAACATCCAAAAGGAGTCCACCCTTCATCTTGTGCTGAGACTTCGTGGGggggcaaagaaaagaaaaaagaagtcttacACTACTCCTAAGAAGAACAAACATAAGAGAAAGAAGGTGAAACTTGCTGTTCTTAAATACTACAAGGTGGATGAGAATGGCAAAATCAGCCGCTTACGTCGTGAGTGTCCCTCTGAAGAATGTGGGGCTGGAGTGTTCATGGCTAGCCACTTTGACAGACATTATTGTGGCAAGTGCTGCTTGACATACTGCTTCAACAAGCCAGAAGACAAGTAA

Publications

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