Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name AP5M1P2
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Ailuropoda melanoleuca
Coordinates chr16:69227924-69228618  UCSC
Strand +
Parental Sequence XM_011225334.3
Parental seq. overlap 571 bp
Parental seq. overlap (%) 8.4%
Genomic Region Intergenic
Retrocopy Summary AP5M1P2, located on chr16:69227924-69228618, is a retrocopy of the parental gene AP5M1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name AP5M1
Full Name N/A
Also known as MUDENG
Coordinate chr14:705720-728810
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens AP5M1P1
Chimpanzee Pan troglodytes AP5M1P1
Bonobo Pan paniscus AP5M1P1
Gorilla Gorilla gorilla AP5M1P1
Orangutan Pongo abelii AP5M1P1
Green monkey Chlorocebus sabaeus AP5M1P1
Crab-eating macaque Macaca fascicularis AP5M1P1
Rhesus Macaca mulatta AP5M1P1
Baboon Papio anubis AP5M1P1
Golden snub-nosed monkey Rhinopithecus roxellana AP5M1P1
Marmoset Callithrix jacchus AP5M1P1
Mouse lemur Microcebus murinus AP5M1P1
Pig Sus scrofa AP5M1P1
Sheep Ovis aries AP5M1P1
Dolphin Tursiops truncatus AP5M1P1
Horse Equus caballus AP5M1P1
Cat Felis catus AP5M1P2
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>AP5M1P2
ACCACCAATGGACCGCCACTTCAGGATACTCTAGTTCATCTTGTTTGATCGCTCTTCACTCTTCCATTCTGATTTTCACTAGTATTGTTGAAATGGATGACTCTACATTTAACGGACTTTACAAATTTCCATTCACTCCATCTTTAGAGTCATTCAACTGATGCCATTATAGTTCCCAGGTCCCTGTCCCACCAATTTTGTGTCTTTATCAGATTAAAGAGGAAGACATTCAGCTAGAAATAACTGCTGATTTAAAATATCATGAAGGTATAAAGATAATTCTGAATTCTATGAAATTCATATGTCTTTTTACAGTAGGGGTCTAAACACACCTTTGGGATACAGTTAGTTTTGTGAAGCTCaaagtattttaagagaaaagctTATTGATCTGATTGGCCCAAAGTTCCCCAAAttaatagagataattttatgGAATTATAAGTTTGGAGCCAAGAGCCACGAGAAGCAGCCATTTGACCAGATTTGTATTGGAGGTACAGCACatccaaaatttcattttaagatattAGATTACATGGTCACTGGGCATTATGTATATCAGCATTCAGTTCAAGTTGTTACATcaggaaaaccaaaaataagtaCATACCAGAAACTAATTTCTTCTGATATTTACATTTGGAATTCTAAAGCTTTACTCCAGTAACATATGGATCcttgtttctgtaatt
>XM_011225334.3
GTCGCCGGGGCTGTGAGGAACCATGATCCTTGCGGGCCACCGTCCCGGAAGTGGACCTTAGAGGAAGAAAGTACGGGGGTTCCTGGGGAGGAATGCTCGGCATTCTAGGTGAGGATTCACAGAACTATTGTGGCAAGTGTTGGCAGGAGGGACCCAGAGGTTTTAGTAACTTCACCTGAAGGAGCCAGCGTCTCTGCTGAGCCTTACCTGTTTGTGGTGGGGCAGAAGGTGGCCCAGGTTGGGTGAGCCTCGGGTCTTCTGGTAGGAGCCCATCTGAGAAAGCCAGTCTGCGTCCTTTCTCCGTGGCGACCTCAGGGATGAGCTGATGCTTTAGTGGCTTGTCATGGCCCAGCGGGCAGTGTGGCTCATTAGCCACGAGCCGGGAACTCCACTTTGTGGCACCGTCAGATTCTCCAGACGGTATCCAACTGTTGAAAAACGAGCCAAAGTCTTCAATGGAACAAGTTATGTGCCTATTCCTGAAGATGGTCCCTTTCTTAAAGCACTGCTTTTTGAACTTAGATTATTGGATGATGATAAGGACTTCGTAGCAAGTCGTGATAGCTGTTCTCACATCAATAAAACATCTGTCTATGGACTCCTAGTAGGAGGTGGAGAACTCTGGCCAGTTGTTGCTTTTCTGAAGAATAACATGATATATGCTTGTGTTCCGTTAGTTGAACAGACTTTATCCCCTCGTCCACCATTAATTAGCATTAGTGGAATTTCACAAAGCTTTGAACTTCTTTTTGGGATACAGGATTTTCTTTACTTGGGTCAAAAAAATGACACTGAGTTAAATACAAAATTGAACCAACTGCCTGATTTGCTTCTACAAGCTTGTCCATTTGGAACTTTGTTAGATGCCAACTTACAGAATTCATTGGATAATATTAATTTTGCTTCTGTGACACATCCACAAAAACAGCCAGCCTGGAAAGTTGGAACATACAAAGGAAAACCACAAGTTTCTATTTCTATCACTGAAAAGGTAAAATCCATGCAATATGATAAACAGGATATAGCAGATACATGGCAGGTTGTTGGAGCAGTCACTTGCAAGTGTGATTTAGAAGGAATCATGCCAAATGTTACCATCAGCTTGAGTCTTCCCACCAATGGATCTCCACTTCAGGACATTCTAGTTCATCCTTGTGTGACTTCTCTTGACTCTGCCATTCTGACTTCTAGTAGCATTGATGCAGTGGATGATTCTGCATTTAGTGGACCTTACAAATTTCCATTCACTCCTCCTTTAGAGTCTTTCAACTTATGCTACTATACTTCGCAGGTTCCAGTCCCACCAATTTTGGGTTTTTatcaaatgaaagaggaagaaatacaagtaaaaataaCGGTTAACTTAAAACTTCATGaaagtgtgaaaaataattttgaattctgTGAAGCTCGTATACCTTTTTATAATAGaggtCCAATCACACATGTGGAATGCAAAGTTAGTTTTGGCCAGCTTGAAGTATTTCGAGAGAAAAGCTTATTGATCTGGATTATTGGACAGAAGTTCCCCAAATCGATGGAAATTAGTCTTTCTGGAACTGTAACTTTTGGAGCCAAGAGTCATGAGAAGCAGCCATTTGATGAGATTTGCATTGGAGGTACAGCATATTTAAAGcttcattTTAGGATCTTAGATTATACACTCACTGGTTGTTATGCGGATCAGCATTCGGTTCAAGTTTTTGCATcaggaaaaccaaaaataagtaCACaccGGAAGCTAATTTCTTCTGACTATTACATCTGGAATTCTAAAGCTCCTGCGCCAGTAACATATGGATCATTATTActgtaattatatttaaataggatttatataatgtaacatagcttaaattaaatcattaagtcttttatttttaatgtgtgtgcATATAACCTATGAATGAAAAAAGTCATTGATTAAATCATAAAATGCTCTTGTTTAATGTGTTTATCCTGACATAGTTTGagagaacattttaaagactAATGTTTCCTATTTTGTTACCCTTTGATTTTACTCAAATATGATTCAGAGCATAAAACAGTAGTGATTCACTTTAGGCTTATTTTAAACTAGTCCTGCGTCACCCTATCATATATACTTTTCCTGTTCCCATGGCAGACATGGCTAATCAGTTGTAGCCTTCTTTCTACACTGAACCTTCCTGGGTATGGGCTCAGGCTCTTTCTCATTGCAGAGCTGCAAACAGCCACTCCTGATGGATTGTAGATAAAAAGATGGATGTGCAAGATGAAAAAACCTCTTTGCTCTTTCAAACCTGAGTAGTAAGCTCCTGGTACAATGTATTGTTACGGAATACCAGAAACCACCGTaaatttcttgggggaaaaagtcaatgaaaacagggaaacaaactgagggcttcagaggggaggggagtaggggaatggaataggctggtgatgagtattaaggagggcacatattgcatggtgcactgggtgttatacgcaagtaatgaatcatggaactttacatcaaaaactagggatgtactgtatggtgactaataaaaaattattattaaaaaaagaaaacaaaggaatattGTTTAAATAGTAATCTGTTCTTAATCAGAACTATCCTATTGACTAATAAAGAATCTGAATAATTCTATTTAAGGTGTTTGTTCATCTCTGTTCTAGAGTTACTTTTCAGGTAAGCTTATTAATCTGCCACAATAACATTTTGCTCAGGATGTCAGTAAGCATACTAAGAGGGGTGGGATACCTTCAGAAAATGAGTGTAGTGTTTTGTGATCACTTAATGCCTGCagccaaatttttaaagataaatttaggtataatactgtttttcatgtttattgtatGAAAATTCTTAATGAATTCAGGTAAAGATTCAAAAGCTGTTCTGTGGGTAGAGAGTATTACTTAATCTTATTTCAGTGTCGTGTAGCctatttcctttaaatttgtCACTCCTGCTTCTTTATTAGCATTCTCTTGATTTCTTCAGGAACCACCCAGTCATACTTTTTATTCTCTGTCTTTACAAATTATATGTCTTATTCGGTTTTCAAAGCAGTTCCTTGTCAAGTTGGACTTTAAGTGACCATTCAAGAAAAGCTGAAATCTCAAGATCCTCAAAACTTAATCCATGTCAAGTTTCTTTTTATGGAACAGAATTAGAAGTGTTATGAAAAAACATGCATTACAGATTAATATTCAATTAAATTATctcttggtttctatttttttaatcagtctcCTAAGGAAAAGCTTAGAAGAAGCTTCTAACTCCTTGAAAGAGAGCTATGATAGTTTGAAGGGAGAGTGCATATAAATTTAGgatttgaaatatgattttttaattaaggtcAATCTCACTCAttataaattctcattttctgtaAGGTATTATCATGGCAGAATACTCTATGTTCAAAATTATCCCAAgtaacaaagaaaatagaataactGCCTGACCAGGACTTTAATTTATTATTCTGGCTTAATCATAGATAATCAGTAGTAAAAACTTTCCTTTTGGAAGCAGAAAAAAGCCCATTTCGCTTAAGTTATTTGATCTCTCTTAAATTCAAAGAAAGCTTAACGTTTAACTTATGTTAATATTAATGGAGCCATTTGGACATCTTGATTGTATAAATGTTGAGTAAAGTACACTAAGATAGGCAAGAGACATTTATCTAGTAAGTACATAGATCCTCAGTATAATAATCCCCTAGGGAAAACTTTCTTTATAAGCAATCAGAAAAACCAGTGAATCTTTGATTTGATATTTCTAGAAGCCTGAGGAAAATCTAGGGAATACTGGAAAAGTGTAGGGCGAAGGGGAACCTGATGCCATCTGTTGCCATTCCATTCTAACATAACACTACAGAACTAAAACCAACTCATGTTTTCATCCTGTTGAGATCAGCTGGGCACACTGTGATGCTTTTGATTTTGTCTAGAAACCTGTCACTTCAGGATAATTTCTGAAGACAAAGTCTGTTTCCCGTTTGGTAGGTGACCTGTTTAATGTTTTCCCTGTGTCTGGGAACTCCTTAGTGTAATTAGCGACCTTTGAACTCCACAACTAATCCTGAGCTATTTTGTATTCCTTACTCATCTTTAAGGCTggacctttcttttcttcagagtcTGCTGCCacaattaaagaagaaacagCTGCATTTCAAAGGGATTCCGATTCCAGAAGCTTAATCGTGATTGACATGTTCTTATTCTAAGCTATAAGACACTCTAAGAGTCCTTTCTTGGGTTAAAACTTcaatcattttctaaaaaattatctcactatggattttattcattttctttgataactagtctttgcattttttaacttgaaagatGCTTTGCATTTGCGGTGAGTATGAGCATCTACTTCCAGTGGAAGATTTGGATGGTGTCAGACATACTCTAGATGCAAAATTGCTAAATTCCCTTTTAGTGCCAAAATATGATTATGAAATCTGATGTCTATCACAAGGGTAATTATTCTTCAGTAGACCCAACAGGTACAAAAAGTGTTAAATTTCTGAAAACGTACTCTAAAAAAAGTGGTTCTTGATTTTCGTAAAACCCTTCTTCGTTTTTTACtgaacagtattttttaaactttttaaagccAGCAATGCTCTTACAGTGTATGGGcactttctatttttcctttttaaattatctattcGAATGTCAGGTTTGAAGGAAATAGCCTTATCAGGAATTCTTGAGAATTATTTGTGTAAAAAGGTTTTTTTGATTAAACAATAGTCTGTctcataaactttatttttttcacaccAACTCAGTATTTTGGAGTTAAaattattgtgatttttatacattgtatGATTTAAGGTCTCAAAGCACAATTTTATACACAgtaataactaatattttattttttattatagtatttcaTACTGCTTTAGAGACATTCATAGACTCCTGTACCACCCCTGAGAGGCAGGTAGGTCGAGTTATCATCCAGAGCCTCTGTGGGGACTGCTGCCATAGCAGAACAGTTGTTTCTAAGACAAAGGTCAGAAAAGGGATGTTAATAAACAGTCCTCAGGTTTAAGGGACTTTTTTAGGATTACATCTTAAATTCCAACAAATCAGATTTAGGAGTTACTGAAAGTGAAATTGATCCATCCCTCATCCAAACTTTGCAATACTTTCCTGTTCTGACATCATTTAGATAGTTAGCTGTATTATCAGATTAGAAACCATTGTGCCCGGCtgctgaaaggaaaaggaggcaaaaaGCTAAACATGGGATGAATTCTGAACCTTTTAACCTGGCTGAAGTACGTTGGTCCCTGTTATGCAAATACCTTCAATCCTCTGCTAAGTTCAGtggaaataattttcttgaatGACAGGTTTATTCAGCAAGGATTCAGTTGGTGATTAATCCCCCTTTGATCTAGGGTATTTCACTTAACTACCAGTTACCTCGTTCTGACAAAGTGCAACTGAGATTAGGAAGATCACTAGAACACTACCAGGGTGTGCGTTTATTCTCTCTAACCTTTTAAAGCAAGGGCCAAGAATgcaatttattttcagtatttgaaGATGTAAAGTCCTGTCTGCTAAGTTAGAAAGTCAATTGAATACCAAATGAAGTTTATTTCTTACGTAATagaacaaacatttctttttgctttgacTAACAATGATTTTAGGAAACAGgctttgaagaaagaagaaacaaagactacATTCTAAGTATATCTTCTAGTTTTGTTTCATGTACTAGAGTGTATACTTATTGGCCCTGAGATAAACCAAAAATCAAAGCAGTGGCTACAACTTAGGTTGAGAAAACGCTCCTATTTTATTAAACTGCATGGTttctccccgccctccccccatTAAAAAATGTCATGCTATGTGGTAAAGAAATCCAATGGGGAAAACATATTGTAATACACAATTATTCGTCTTAAGACTTGCGGTTTCAAAGCTTTATTTGTTAACTTTGCCCTTCCTTGAGGAAAAAGGGCTTGTTATATTGCCATCGTAAGAATAATCACATTCTTTTTCAGAatgatggtttttttttccatgaaagtaAATGATGCCATtacaaaaataatccaaattactttaaattatcaaaataactACTCTCCACTGTATCGTTTACTATTTCTTCTTATGCCTTTTTCGCATTTAATTGGATACCTCTTCTTCTAtaactttaaactttaaaatactttatggaattttgcataatattttaagaataaaattttaagatgtgttttatgCTGGGCTTCATAAaaactcacttttaaaaactattagcAACATTAGTGTCAATATTCATCTTCCAAGATATCAAATTTGGAGATTTATTCCTTAAGTATATTTCAAGATTGactcttagaaaaagaaacataatgatttgtaacaaaaatagttttaaaatattaaattattattgattaatttttttattactgacaAGGCATTTTTTAGATGCTTTAGAATTGTCCATTATTCTAGTAGCAGTTTAGAGTACAAATTACATAGTTAGGTAACTTTCCCACACATTTTTTGTCTCAGACATTCTGTGATCCAATTTCTAAATTGAAACAATGACTTGTACACATCTAATTCATGTTGATGCCAAACCAGTCTCTCTAGTTTCAATTTAGTAACCAGTCTGTttctaaacatcttttttttttttttttaagattttatttatttatttgacagagagagacagccagtgagagagggaacacaagcagggggagtaggaaaggaagaagcaggcttccagcggag

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