Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name CSRP2P1
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Ailuropoda melanoleuca
Coordinates chr20:23972210-23972729  UCSC
Strand -
Parental Sequence XM_002920644.4
Parental seq. overlap 448 bp
Parental seq. overlap (%) 50.9%
Genomic Region Intergenic
Retrocopy Summary CSRP2P1, located on chr20:23972210-23972729, is a retrocopy of the parental gene CSRP2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CSRP2
Full Name N/A
Also known as -
Coordinate chr15:50218020-50236216
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Cow Bos taurus CSRP2P1
Sheep Ovis aries CSRP2P1
Dolphin Tursiops truncatus CSRP2P1
Dog Canis familiaris CSRP2P1
Cat Felis catus CSRP2P1
Pale spear-nosed bat Phyllostomus discolor CSRP2P1
Greater mouse-eared bat Myotis myotis CSRP2P1
Greater horseshoe bat Rhinolophus ferrumequinum CSRP2P2
Egyptian rousette Rousettus aegyptiacus CSRP2P2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Horse Equus caballus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CSRP2P1
CTGCTGCTTTCTGTGCATGGATTGCAGGACAAATTTAGACGGCATAGTGGTAGTGATGCATGATGAAGAGATCTACTTGCAAATCTTACTATGGAAAGAAGGATGGGCTGAAAGGCTACTGTTGCAGCCAGGGCACTGGCGCACTCAACATGGACGGTGAGGAGAGGCTGGGCATCAAACCCAAGTTCAACCTCACATGATTATGACAAATCCAAACACTTCTTAATTTGCTCAGAAATGCAGAGGTACGGAGAAGTATCCCACATATGGGGATTCTGTATATGCTGCTGAGAAGATAATTGGAGCTGGATAACCCTAGCACAAAAACTGTTTCCTAAGTGCCAAGTGTGGGAAGGATCTTGAACCAACAACTCTAAGAAGATGAAATCTATTGTAAAGGATGCTATGCAAAGAACTTGGGGCCCATGGGATTGGCTATGGCTATGGAGCAGGAGTCCTTTATCACACTCAGTAAAGGTGTAAACCCAGAACTGAGGTCATACACTGAGAATCTCTACAC
>XM_002920644.4
GTCTCCGCCGGCTGTGCGTGGTCTGCCTCCGACTCGAAATGCCCGTGTGGGGAGGTGGCAACAAGTGCGGGGCCTGTGGGAGGACCGTGTACCACGCGGAAGAGGTGCAGTGTGACGGGAGAAGCTTCCACCGCTGCTGCTTTCTGTGCATGGTTTGCAGGAAAAATTTAGATAGCACAACAGTGGCAATTCATGATGAGGAGATCTACTGCAAATCCTGCTATGGAAAGAAGTATGGGCCCAAAGGCTACGGTTACGGGCAGGGTGCTGGCACGCTCAACATGGACCGGGGTGAAAGGCTGGGCATCAAGCCAGAGAGTGCTCAACCTCACAGACCTACAACAAATCCAAACACTTCTAAATTTGCTCAGAAATACGGAGGTGCTGAGAAGTGTTCCAGATGTGGGGATTCCGTGTATGCTGCTGAGAAGATAATTGGAGCTGGAAAGCCCTGGCATAAAAACTGTTTCCGGTGTGCCAAGTGTGGGAAGAGTCTTGAATCCACAACTCTGACTGAGAAAGAGGGTGAAATCTATTgtaaagGATGCTATGCAAAGAACTTTGGGCCCAAGGGATTTGGCTATGGCCAAGGAGCAGGAGCCCTTGTTCATGCTCAGTAAAGGTGTAAACCCAGAACTGAGATCACACACTGAGAATCTCTACATCATCTAGGCACAGATAATCCAACACTAAACTACTGTGAAATTCTGCCAGCACTTAAGTACTGTCTATCGTCCCATACATGGATAGGCTGGCTGGCTGACTAGCAGGAAGAGAGCACTGTATCCTTTTGCTTCATTCATCAGCATTTTCAAGAattgtttcttttacattttaaataaaatttcagcttGATTTGGTTGTTCAGTGTCTT

Publications

PMID - Link Title