Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPSAP50
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr14:36333110-36334078  UCSC
Strand -
Parental Sequence XM_002813909.4
Parental seq. overlap 870 bp
Parental seq. overlap (%) 80.5%
Genomic Region Intragenic (WDHD1)
Retrocopy Summary RPSAP50, located on chr14:36333110-36334078, is a retrocopy of the parental gene RPSA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPSA
Full Name N/A
Also known as -
Coordinate chr3:102531424-102537176
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPSAP13
Chimpanzee Pan troglodytes RPSAP52
Bonobo Pan paniscus RPSAP53
Gorilla Gorilla gorilla RPSAP51
Gibbon Nomascus leucogenys RPSAP4
Green monkey Chlorocebus sabaeus RPSAP44
Crab-eating macaque Macaca fascicularis RPSAP30
Rhesus Macaca mulatta RPSAP31
Baboon Papio anubis RPSAP28
Golden snub-nosed monkey Rhinopithecus roxellana RPSAP22
Marmoset Callithrix jacchus RPSAP47
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPSAP50
GTTGTTCTGGATTCCCATTGTAACTTAAAGGGAAACTTTCACAATGTCTGGAACCTCGATGTCCTGCAAATGAAGGAGGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCCACTTAGGTAGCACCAGCTTTGTCTTCCAGATGGAACAGTACATCTATAAAAGGAAAAGTGTTGGCATCTACATCATAAATCTGAAGAGGACCTGGGAGAAGCATCTGCTGGGAGCTTGTGCCATTGTTGCTGTTGAAAACCCTGTCAATGTCAGTGTCATATCATCCAGGAATACTGGTCCGAGGGCCATGCTGAAGTTTGCTGCTGCCACTGGAGTCACTCCAATTGCTGGCTGCTTCACTCCTGGAACTTTCATTAACCAGATCCAGGCAGCCTTTTAGGAGCCACAGCTTCTTATGGTGACTAATCCCAGTGCTGATCACCAGCCTCTCACAGAGGCATCTTATGTTAACCTACCTACCATTGCTCTGTCACACAGATTTTCCTCTGTGTTATGTGGACAGTACCATCCCATGCAACAACAAGGGAGCTTACTCAGTGGGATTGATGTGGTGGATGCCGGAAGTTCGCCTGCATGGCACCATTTCCTGCGGGAGGTTATGCCTGATCTCTACTTCTACAGTATTCCTGAAGAGATTGAAAAAGAAGAGCAGCCTGCTGCTGAAAAGGCTGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCAGCTCCTGAGTTCAGTGCTCCTCAACCTGAGGTTGCAGACTGGTCTGATGGTGTGCAGGTGCCCTCTGTGCCTATTTAGCAATTCCTTCCTGAAAACTGGAGTGCTCAGCCTGCCACGGAAGACTGGTCTGCGGCTCCCCACTGCTCAGACCACCGAATGCATAGGAACAACCACTGAGTGATATAAAGCTGTTCTTGCACAGGCTCTTAAGCAACATGGAAATAAGGCTGATGAAAAATAAACATT
>XM_002813909.4
GGCTGACAACGGAGTATATAAGGACGTCATTTCCTGTCTCCTGTCCTTTCCGCGCTATCTGCAGAGGGATCCATACGGCGTTGTTCTGGATTCCCGTCGTAACTTAAAGGGAAACTTTCACAATGTCCggagcccttgatgtcctgcaaatgaaggagGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCCACTTAGGTGGCACCAATCTTGACTTCCAGATGGAACAGTACATCTATAAAAGGAAAAGTGATGGCATCTATATCATAAATCTGAAGAGGACGTGGGAGAAGCTTCTGTTGGCAGCTCGTGCTATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCCTCCAGGAATACTGGCCAGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCTTGTGGTTACTGACCCCAGGGCTGACCACCAGCCTCTCACGGAGGCATCTTACGTTAACCTGCCTACCATTGCGCTGTGTAACACAGATTCTCCTTTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTCTTCGCATGCGTGGCACCATTTCCCGTGAACACCCATGGGAGGTCATGCCTGATCTGTACTTCTACAGAGATCCTGAAGAGATTGAAAAAGAAGAGCAGGCTGCTGCTGAAAAGGCAGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCAGCTCCTGAGTTCACTGCTACTCAGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGTGCCTATTCAGCAGTTCCCTACTGAAGACTGGAGCGCTCAGCCTGCCACAGAAGACTGGTCTGCAGCTCCCACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGACTGGTCTTAAGCTGTTCTTGCGTAGGCTTTTAAGCAACATGGAAAAATGGTTGATGGAAAATAAACATCAGTTTCTAAAA

Publications

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