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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100476647P13
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Ailuropoda melanoleuca
Coordinates chr10:80077078-80077298  UCSC
Strand -
Parental Sequence XM_002920023.4
Parental seq. overlap 196 bp
Parental seq. overlap (%) 34%
Genomic Region Intragenic (EYA4)
Retrocopy Summary LOC100476647P13, located on chr10:80077078-80077298, is a retrocopy of the parental gene LOC100476647. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100476647
Full Name N/A
Also known as HSPE1
Coordinate chr2:162477317-162511473
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HSPE1P21
Chimpanzee Pan troglodytes HSPE1P12
Bonobo Pan paniscus LOC100982477P12
Gorilla Gorilla gorilla LOC101151505P11
Orangutan Pongo abelii HSPE1P8
Mouse lemur Microcebus murinus HSPE1P7
Sheep Ovis aries LOC106990104P3
Dolphin Tursiops truncatus HSPE1P7
Horse Equus caballus LOC100070523P2
Dog Canis familiaris HSPE1P2
Greater horseshoe bat Rhinolophus ferrumequinum HSPE1P6
Egyptian rousette Rousettus aegyptiacus HSPE1P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100476647P13
AACCAAAGGAGGCATTATGCTTCCAGAAAAATCTCAGGGAAAAGTAAGGCAAGCAACAGTAGTGGCTACTGGATTGGGCTCTAAAGGAAAGGGTGGAGAGATTTAATCATTAGCatgaaaattggaaataaagTTCTCCCAGAATAGGGAGGCAGCAAAGTAGTTCTAGACAACAAGacttatttcttatttagagACAGTGACATTCTCGGTAAGTATGA
>XM_002920023.4
TTTTGCTGGGAGGAGCGGGGGGCGGGAGAGAGCGCGCTTGCGCGCTAGGCGTCTTTTCCCACGTTCACGTGGCACGCAGGTCGGACTGCGGGTCTCCTTGCAGCGGCGGCAGCTTCAGAGCTGAGTAGGAACTGCGGCGGCCGGAGTCATGGCAGGGCAGGCGTTTAGaaagtttcttcctctctttgaCCGAGTTTTAGTTGAAAGGAGTGCTGCTGAAACTGTAACCAAAGGAGGTATTATGcttccagaaaaatctcaagGAAAAGTGTTGCAAGCAACAGTAGTAGCTGTTGGATCGGGCTCTAAAGGAAAGGGTGGAGAGATTCAACCAGTTAGTGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAAGTAGTTCTAGATGACAAGgattatttcttatttagagATGGTGACATTCTCGGAAAGTATGTGGAGTGAAATCATTAAAATGGCATGAAGTGAAACTGCCCATTCCAGTGAAGTTATGAAATCTTTCATCATGTAAATAATTTTCATgtctcttttataataaactaatgGTATCCAAACTAATGATA

Publications

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