Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name LOC100478013P2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Ailuropoda melanoleuca
Coordinates chr4:25536393-25536770  UCSC
Strand -
Parental Sequence XM_002927998.4
Parental seq. overlap 337 bp
Parental seq. overlap (%) 36.4%
Genomic Region Intragenic (ABHD6)
Retrocopy Summary LOC100478013P2, located on chr4:25536393-25536770, is a retrocopy of the parental gene LOC100478013. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100478013
Full Name N/A
Also known as -
Coordinate chr11:29992324-29994444
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa H2AFZP2
Sheep Ovis aries H2AFZP2
Horse Equus caballus LOC100146489P2
Dog Canis familiaris H2AZ1P4
Cat Felis catus LOC101087401P2
Pale spear-nosed bat Phyllostomus discolor H2AFZP5
Greater horseshoe bat Rhinolophus ferrumequinum H2AFZP5
Egyptian rousette Rousettus aegyptiacus H2AFZP2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100478013P2
GCAACTTGCTCTTCGTGGAGGTGAAGCGCCAGCCTCTCGCATCAAGGCTACATTTGCTGGGGGTGGTGTCATTCCACACATCCACAAGTCTCTGACTGGGGAGAAAGGACAACAGAAGACTGTCTAAAGGGTGCCTGGATTCCTGAAGATCTCAGGACCAAACCCTCGGACAGCTGTCCAGTGTTGGTGAGTCCAGTGGactctatctctgtgaaaaacaCAATTTTGTCCTTTTATAATTCTATTTGAGCAAGTGGGAAGTTTAATTAGCTTTCCAGCCAACCAAATTTCTGCTTTTGAGTCTTAACCTTATTTAAGAGTTAGTGTGGCTTCGAAGCTATTGATTTTGAACAAGTGGATTTTGATTGAGTGGACTGG
>XM_002927998.4
CGGATGAGGGAACATTCAGCAGTATAAAGGGAGCGGGGAAGGCGGGAGACAGCGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGCGGTGggatctcgctggctgtctgacTAGTCCTTTTTCTGCCTTGGTTGTTTGAGCTTCAGCAGAATTCGAAATGGCTGGCGGTAAGGCTGGGAAGGACTCCGGAAAGGCCAAGACAAAGGCGGTTTCCCGCTCACAGAGAGCCGGCTTGCAGTTCCCGGTGGGCCGTATTCATCGACACCTGAAATCTAGGACGACCAGTCATGGGCGTGTGGGCGCGACTGCCGCTGTGTACAGCGCAGCCATCCTGGAGTACCTCACCGCAGAGGTACTTGAATTGGCAGGAAATGCATCAAAAGACTTGAAGGTAAAGCGTATTACCCCTCGTCACTTGCAACTTGCTATTCGTGGAGATGAAGAATTGGACTCTCTCATCAAGGCTACAATTGCTGGTGGTGGTGTCATTCCACACATCCACAAATCTCTGATTGGGAAGAAAGGACAACAGAAGACTGTTTAAAGGATGCCTGGATTCCTTATTATCTCAGGACTCTAAATACTCTTAACAGCTGTCCAGTGTTGGTGATTCCAGTGGACTGTATCTCTGTGAAAAACACAATTTTGCCTTTTTGTAATTCTATTTGAGCAAGTTGGAAGTTTAATTAGCTTTCCAACCAACCAAATTTCTGCATTCGAGTCTTAACCATATTTAAGTGTTACTGTGGCTTCAAAGAAGCTATTGATTCTGAAGTAGTGGGTTTTGATTGAgttgactgtttttaaaaaactgtttggATTTTAATTGTGATGCAGAAGTTATAGTAACAAACATTTGGTTTTGTACAGAATTATTTCCACTCCAGTGGATAAGCTCAATAAAGGTCATATCCCAAACTA

Publications

PMID - Link Title