Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name MRPL45P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Ailuropoda melanoleuca
Coordinates chr6:45076759-45076993  UCSC
Strand -
Parental Sequence XM_034641012.1
Parental seq. overlap 198 bp
Parental seq. overlap (%) 14.3%
Genomic Region Intergenic
Retrocopy Summary MRPL45P1, located on chr6:45076759-45076993, is a retrocopy of the parental gene MRPL45. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MRPL45
Full Name N/A
Also known as -
Coordinate chr13:23191559-23206896
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Dolphin Tursiops truncatus MRPL45P1
Cat Felis catus MRPL45P2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MRPL45P1
tttaaaacaaatggcTTCCCTGAAAAAGCAAGGATATCTTCACAGAAGCTCATCTTTATCTAAATAATTCAGACTATGACTGGCTTCATACTTTGGTAACTGAAAACTGTTTCCCAGATGTGGTCTGGGACATCAAATACAAGACCATCCACTGGAAGAATCTTTAGAGCCAGCCCAGTGGTTCAGGTTCATTGTTCAAGTCTGCTGAACCAGGACAACTCATATGGCCAGGTCC
>XM_034641012.1
CTCTGGCCCAGAACCAGATGGCACGTCCCACCCTAGAAGTGACTatgaaagaacagagaggaaaagggaagaactgAACCAGGTGGAGAAGTGATGCTCCAGAAAACACAGGGCAAAATACAAGAGACTTTTGTCTCGGAGccAGTCCTGGTGACTCAGTCCACAGTTGTAGTTCCAGTGAGAACTAAGAAATGTTCCACACCTCTTGCTTATAAACCCAAATTCAATTCAGAAAAGGAGTTTATGGAATTTGCCCGGAAAGCAGGATTGGTCATTCCTCCAGAACGTTTGGAGCGTCCCTTACATCTGGCCTGTACAGCTGGTATCTTTGACGCCTATGTTCCTCCAGAAGGTGATGCTCGCTTGTCATCTCTTGGGAAGGAAGGACTGGCACAGAGAAGTGAGCGATTGAAGAAGAAGGTGGCATCACAATTGTCAATCCGGAAGATAAGAGAACatgatccaaattttaaaataaaggacttCCCTGAAAAAGCTAAGGATATTTTTATTGAAGCTCACCTTTGTCTAAACAActcaGACCACAACCGGCTTCATACCTTGGTAACTGAAAACTGTTTTCCGGACATGGTCTGGGACATCACCTATAAGACCGTCCGCTGGAGCTTCATAGAATCTTTAGAGCCACCGCAGGTGGTTCAGGTTCGCTGTTCGAGTATGCTGAGCCAGGGCAACATATACGGCCAGGTCACTGTCCGCATGCACACCCGGCAGACTCTGGCCATCTATGACCGGTTTGGCCGGCTGATGTACGGACAGGAAGATGTGCCCAAGGATGTCCTGGAGTATGTTgtgtttgaaaagcacctggtaAATCCCTATGGGAGCTGGAGAATGCATGGCAAGATCATTCCCCCATGGGCACCCCCTAAGCAGCCCATCCTTAAGACGGTGATGATCCCTGGGCCCCAGCTGAAACCCTGGGAAGACTATGAAGAGCCACAGAGAGTGGCCCCATAAGCTTCAGCTATCCTGATGGCAAAAATGACTCCAGGGTTGAAGCATGGGTGATGAGGTGGCTGGACGCTGTGGTGTCTGGGAGCTGTAAAGTCCGTCATCCCTCCATCATGCTGTAGAAAGATCTACCTTTGTCCTTTCCTGTCCTGCTTGGGTGTTTCCAGCCGTCTCCTTGGCAACCTTGGCTGATGGCTGGGCCCAGGTGGGTGGGTGGCTGATACAGCCGTGAACCCactacttcttcctttttgaatTGTATATCTGCCTTCTGAGTCTCAATGGAAAGTATGTTTCGGATACCTGTTTCTTCTGCAGCAGAGACTGTCAGGAGCAAActggcagaattttctttttaattacaatGCAGGGAttagagtttaaaataaaacactgtcaGGGTGTTGGACAAAC

Publications

PMID - Link Title