Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SKP1P4
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr5:77093793-77094642  UCSC
Strand -
Parental Sequence NM_001134165.1
Parental seq. overlap 760 bp
Parental seq. overlap (%) 38.8%
Genomic Region Intragenic (MSH3)
Retrocopy Summary SKP1P4, located on chr5:77093793-77094642, is a retrocopy of the parental gene SKP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SKP1
Full Name N/A
Also known as SKP1A
Coordinate chr5:131377533-131417237
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SKP1P7
Chimpanzee Pan troglodytes SKP1P2
Bonobo Pan paniscus SKP1P2
Gorilla Gorilla gorilla SKP1P4
Gibbon Nomascus leucogenys SKP1P1
Green monkey Chlorocebus sabaeus SKP1P2
Crab-eating macaque Macaca fascicularis SKP1P3
Rhesus Macaca mulatta SKP1P3
Baboon Papio anubis SKP1P3
Golden snub-nosed monkey Rhinopithecus roxellana SKP1P2
Marmoset Callithrix jacchus SKP1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SKP1P4
AACACCATGCCATCAATTAAGGTGCTGAGTTCTGATGCGGAGATATTTGATGTGGAAATTGCCAATCTGTGACTATCAAGACCATGTTGGAAGATATGAGAATGGACGATGGAGATAATGACCCAGCTCCTCTACCAAAGTTAATGCAGCAATATTTTCAAAAGGTCATTTGGTGGTGTACCCACCACAAAAATGGCCGTCCTCCTCCCAAGGATGATGTGAACAAAGAAAACGAACAGAGGAGATCCCTCCTTAGGACCAACAATTCCTGAAAGTTGATCAAGGAATACTTTTTGTACTTCTTCTGCCTGCAAACTACTTAAGACATCAAAGGTTTGCTTGATGTTACACGCAAGACTGTTGCCAATACGATCAAGGAGAAAAGTCCTGAGAAGATTCGCAAGACTTCCAATATCAAAAATGACTTTACTGAAGAAGAGGAAACCCAGGTACGCCAAGAGAACCAGCGGTGTGAACAGAAGTGAAACGTCCTTGATGCCGTCACACTGTAAGGATTGTTCCAAATATTAGCTGCCCTGCTCTGTTTATAATTGTTAATATCAGACAAAGAGCAGAGAAATGCAGCAGCAAATCAATCGTATGAGCAGAATATTGTCCTCAGTGAATGTGTGGTGTGAATACAGATTCCAAACCTATGGCTGAGTTTCTCATAGTATGATCAAGTTTCTTTTTTCTTTGCTCTGAATAAAACTGTACTGTGGGTTCTCTATAGAAGGTGGCATTTTGGGCTTTCCCTCTTTTTTGTAAAGTGATGTCTGCCTAGATTACTGTCCAGTTAACTTTAGTGACCTTTTAAAGTTGGCATTGTAAAAAAAACAACTTGCAAAAG
>NM_001134165.1
GGCCATTAGGgccggggGCTGTAGTGGGTTCGTCCTCCGCTTTTCTCTTCCTCTGCTGACGGCGTCTAGTTCTCGTCAGCCTCCCCGCCGGCCGTCTCCTTAACACCGAACACCATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTGGAAATTGCCAAACAATCTGTGACTATTAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCCTCTACCAAATGTGAATGCAGCAATATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAGGATGACCCTCCTCCTCCTGAAGATGATGAGAACAAAGAAAAGCGAACAGACGATATTCCTGTTTGGGACCAAGAATTCCTGAAAGTTGACCAAGGAACACTTTTTGAACTCATTCTGGCTGCAAACTACTTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAATATCAAAAATGACTTTACTGAAGAGGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGTGAAGAGAAGTGAAATGTTGTGCCTGACACTGTAACACTGTAAGGATTGTTCCAAATACTAGTTGCACTGCTCTGTTTATAATTGTTAATATTAGACAAACAGTAGACAAATGCAGCAGCAAGTCAATTGTATTAGCAGAATATTGTCCTCATTGCATGTGTAGTTTGAGCACAGATTCCAAATCTTATGGCCGAGTTTCTTCTAGTATGATGGAAAGTTTCTTTTTTCTTTGCTCTGAATAAAACTGAACTGTGGGTTCTCTATAAGTGGCATTTTGGGCTTTCCCTCTTTTTTGTAAAGCAATGTCTGCCTAGTTTATTGTCCAGTTAACTTTAGTGACCTTTTAAAAGTTGGCATTGTAAATAAAACAACTTGCAAAAAAGTTTTCTGGAATAGAATTAACAAAATATTATCTTTATTCATGAGTTGGAAACTGGAAAAAGGCTTCTTGAAGTAAATGTTCTGAGTGGAGTTACTAGGATGTCTTCCAGCCTCCTGCAGTCAAGGAGTACCACTACTGTATTGATTAGCCTGTATGTAGCAGGGCTCCCTTCATTGCATCTGAGGACTTGTTTTCTTTTTAATTTTATTTTTAATCCTCTTAGTTTTAAATATCTTGCCTAGAGACTCAGTTACTACCCAGTTTGTGGTTTTTTGGGAGAAATGTAACTGGACAGTTTGTTAGCTTTTCAATTAAAAAGACACTTAACCCATGTGGGATGTCATCTTTTTATAATTAGTGTTCCCATGTGGAGAAAATTATTCACACTACTTGCATGTAAAAAAATAATTTAACTTTTAACATTAAAATATGTAGTAAAACCCAGAAAGCATCCATCATGAATGCAAGATACTTTCAATAAAAAGTAAGTTATATAGTAGGTAGTTAAGTTTGCTTTTGTGGACTTAAATGTGTCTCTTCACTTAAATGGGTTGAACGTGTATATATTTGTTCAGCTTGAAAAGACTTAGTTTATGTCCTAGCTCACTGGAGGCTGCTGACATAACCATAACTTCTGTCCCTTCTAATTGTCATTTATATGCCTAACTGGAGCTAGTACTTTAATTCTTAACACAAAATTACTCTGCCATTGTTTCCAGCTTCCCTCCTACAATAGAATGAAGTTTTTTTGATGGCTTGAGATGGCTCACAAATTTTGATTTTTTTTTCTTCCTTGTGCTCCCTTTTTTTCTCCTTCCTTTTCCAGTTAACATCTATATTCACATGTAATCTTGTTTTCTCTTCACATCCACTGAGTTGTTCAGGCTCAGATCATCCCTTGACAGTAGTTTGCCTTCATCTCACCTTTCATTTGTCCCAAATTCACCTTATTTAATAAAGTCCCATATGTTGTCTCA

Publications

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