Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTBP5
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr7_NW_019937272v1_random). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr3:173637423-173639169  UCSC
Strand -
Parental Sequence NM_001133354.1
Parental seq. overlap 1514 bp
Parental seq. overlap (%) 83%
Genomic Region Intergenic
Retrocopy Summary ACTBP5, located on chr3:173637423-173639169, is a retrocopy of the parental gene ACTB. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTB
Full Name N/A
Also known as -
Coordinate chr7_NW_019937272v1_random:391019-394443
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTG1P23
Chimpanzee Pan troglodytes ACTBP4
Bonobo Pan paniscus ACTG1P15
Gorilla Gorilla gorilla LOC101127752P5
Gibbon Nomascus leucogenys ACTBP14
Green monkey Chlorocebus sabaeus ACTBP9
Crab-eating macaque Macaca fascicularis ACTBP4
Rhesus Macaca mulatta ACTBP4
Baboon Papio anubis ACTBP4
Golden snub-nosed monkey Rhinopithecus roxellana ACTBP2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTBP5
GAGACGGCGTTCACCCCGCGAGCACAGAACCTGGCCCTCGCCACCCCGCCGCCAGTCCACACCAGCTGCCAGTTCACCATGATGATATCACCGGGCTTGTAGTCAACAAAGGCTCCTGCATGTGCAAGACCAGCTTCGCAGGCGACGATGCCTCCGGGGCCGTCTTCCCATCTATCGTGGGGCGCCCCAGGCACCAAGGTGTGATGGTGGGCATGGGTCAGAAGGACTCCTAGTGGGTGACGAGGCCCAGAGCAAGAGAAGCATCCTGACCCTGAACTAGAACGACATGGAAGATCGGGCACCACACCTTCTACAACCAGCTGCCTGTGGCTCCTGAGGAGCACCCCGTGCTGCTGACCGAGACCCCCACAACCCCAAGGCCAATCACGAGAAGATGACCTAGATCACGTTTGAGACCTTCAGCACCCCAGTCATGTATGTGGCCATCCAGGCCGTGCTGTCCCTGTGGGCCTCTGGCCGTACCACTGGCATGGTGATGGACTCCGGTGAAGGGTCACCCACACTGTGCCCATCTATGAGGGGTATACCCTCCACCACGCCATCCTGCATCTGGACCTGGCTGGCCCTGGAGTGACTGACTACCTCATGAACATCCTCACCCAGTGCCTACAGCTTCACCACCACTGCCAAGCAGGAAATTGTGGATGACATCAAGGAGAAGCTGTGCTAGGTCGCCCTGGACTTGGATCAGGAGATGGCCATGGTGGCCTCCAGCTCCTTCCTGGAGAAGAGCTATGAGCTGCCCTACATCCCGGTCATCACCATCCGCAACCAGCGGTTCTGCTGCCCCAAGTCGCTCTTCCAGCCTTCCTTCCTGGGCATGAAATCCTGTGGCATCCACGAAACTACCTTCAACTCCATCATGAAGTGTGATGTGGACATCCACAAAGCCCTGTGCTTCAACACAGTGCTGTCTGGCGGCACCACCATGTATCCTAGCATCGCGGACAGGATGTAGGAGATCACTGCCCAGGCGCCCAGCACCATGAAGCTCAAGACCATTGCTCCTCCGAGCACAAGTACTCCCTGTGGATCGGCAGCCTCATCCTGGCCTCCTTTCCACCTCCCAGTAGATGTGGATCAGCAAGCAAGAGTATGACGAGTTCGGCCCCTCTGTCGTCCACTGCAAATACTTCTAGGCAGACTGTAACTTAGTTGCATTACACCCTTTTTTGACAAAACCTAACTTGCACAGAAAACAAAATGAGATTGGCACATGGCtGGCTTGACTCAGGAACAAAGGTAACAGGAGTCAGTTGTAGCAAGCATCCTCCAAAGTTCTACAATGTGGCCTAGGACTTTGATGGTACATTGTTCTTTTTTTAATAGTCATTCCAAATATCATGAGATGCATTGTTACAGGAAGTCTCTTGCCCTCCTAAAAGCCACCCCACTTTTCTCTAAGGAAAATGCCCTAGTCCTCTCCTGAGTCCACACAGGGGAGGTGATAGCATCGCCTTCATGTAAATTATGTAATATACATTTTTTTAATCTTCGCCTTAATACTTTTTTATTTTGTTTTATTTTGAATGATCAGCCTTTGTGGCCTCCCTTTTTTGTCCCCCAACTTGAGATGTATGAAGGCTTTTGGTCTCCCTGGGAGTGGGTGGAGGTAGCCAGGGCCTGACTTGAGACCACTGACTTGAGACCAGTTAAATAGAAGTGCACACCTT
>NM_001133354.1
accgccgagaccgcgtccgccccgcgagcacagaccCTCGCCTTTGCCGCTCCACCGCCCGTCCACACCCGCCGCCAGCTCACCATGGATGATGATATCGCCGCGCTCGTCGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGATTCCTATGTGGGCGACGAAGCCCAGAGCAAGAGAGGCATCCTCACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGATCATGTTTGAAACCTTCAACACCCCAGCCATGTACGTGGCTATCCAGGCTGTGCTGTCCCTGTACGCCTCTGGCCGTACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACCCACACTGTGCCCATCTACGAGGGGTATGCCCTCCCCCATGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGTGACATTAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACGGCTGCTTCCAGCTCCTCCCTGGAGAAGAGCTACGAGCTGCCCGATGGCCAGGTCATCACCATTGGCAACGAGCGGTTCCGCTGCCCCGAGGCGCTCTTCCAGCCTTCCTTCCTTGGCATGGAGTCCTGTGGCATTCACGAAACTACCTTCAACTCCATCATGAAGTGTGACGTGGACATCCGCAAAGACCTGTACGCCAACACAGTGCTGTCTGGCGGCACCACCATGTACCCTGGCATTGCCGACAGGATGCAGAAGGAGATCACCGCCCTGGCACCCAGCACCATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGGCGGACTGTGACTTAGTTGCGTTACACCCTTTCTTGACAAAACCTAACTTGCGCAGAAAACAAGATGAGATTGGCATGGCtttatttgtttttttttttgtttgttttgttttgggttttttttttGGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGAGCGAGCATCCCCCAAAGTTCACAATGTGGCCGAGGACTTTGATTGCACATTGTTCTTTTTTTAATAGTCATTCCAAATATGAGATGCATTGTTACAGGAAGTCCCTTGCCATCCTAAAAGCCACCCCACTTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCGAGTCCACACAGGGGAGGTGATAGCATTGCTTTCGTGTAAATTATGTAATGCAAAATTTTTTTAATCTTCGCCTTAATACTTTTTTATTTTGTTTTATTTTGAATGATGAGCCTTCGTGCCCCCCCTTCCCCCTTTTTTGTCCCCCAACTTAAGATGTATGAAGGCTTTTGGTCTCCCTGGGAGTGGGTGGAGGCAGCCAGGGCTTACCTGTACACTGACTTGAGACCAGTTGAATAAAAATGCACACCTTAAAAA

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