Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC6A14P1
Plot displaying the genomic locations of a retrocopy (in chr2B) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr2B:4944027-4944428  UCSC
Strand +
Parental Sequence XM_002832027.2
Parental seq. overlap 326 bp
Parental seq. overlap (%) 7.1%
Genomic Region Intergenic
Retrocopy Summary SLC6A14P1, located on chr2B:4944027-4944428, is a retrocopy of the parental gene SLC6A14. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC6A14
Full Name N/A
Also known as -
Coordinate chrX:110939264-110964294
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SLC6A14P3
Chimpanzee Pan troglodytes SLC6A14P1
Bonobo Pan paniscus SLC6A14P1
Gorilla Gorilla gorilla SLC6A14P1
Green monkey Chlorocebus sabaeus SLC6A14P1
Crab-eating macaque Macaca fascicularis SLC6A14P1
Rhesus Macaca mulatta SLC6A14P1
Baboon Papio anubis SLC6A14P1
Golden snub-nosed monkey Rhinopithecus roxellana SLC6A14P1
Mouse lemur Microcebus murinus SLC6A14P1
Dolphin Tursiops truncatus SLC6A14P1
Horse Equus caballus SLC6A14P1
Dog Canis familiaris SLC6A14P1
Cat Felis catus SLC6A14P1
Greater mouse-eared bat Myotis myotis SLC6A14P1
Greater horseshoe bat Rhinolophus ferrumequinum SLC6A14P1
Egyptian rousette Rousettus aegyptiacus SLC6A14P1
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC6A14P1
ATCTGTGTGGTTCAAGCTGGAATTTAGTGGCTCATCTGACTGGCCACTTCTGTACTGAACGGGGCATTTTGATTGCAACTATACTGGAACTAATAGGAATCATCTGGGTTTATGGAGGGAACAGATTCCTTGAAGATATAAACATGATAATGGAACAGAGGTGGATATTCCTGCTGCGATGGAAAACTTGCTGGTTTGTCATTATGTCTATATGACATTATGCCTATTATTTTTATTGCAATTTTTATCTGGACACTAGTGAAATATCATAGACTTGATTATGCCAAAATCTTGTACCCTGACTGAGAAGTTGCTAAAAGCTGGTGTATGATTATTTTCTGTATTATTGCATTTCAATTATGGCTATCATAAAAATAATTCAGGCTGAAGGAAACATCTTTC
>XM_002832027.2
ATAAATGTTCCCACCCCTGGGCAAGGTGGCTCACTCTGGCAGGTAGGAACAGGGGAGTGTGCACCTGCCACCAGTCAAGCTCAGCCAGACTGCAAGAGGAGGCGAGGCGGAGCCAGCCGAGGGAGTGAACCATGGACAAGTTGAAATGCCCGAGTTTCTTCAAGTGCAGGGAGAAGGAGAAAGTGTCGGCTTCATCAGAGAATTTCCACGTTGGTGAAAATGATGAGAATCAGGACCGTGGTAACTGGTCCAAAAAATCGGATTATCTTCTATCTATGATTGGATACGCAGTGGGGTTAGGAAATGTGTGGAGATTTCCATATCTGACCTACAACAATGGTGGAGGCGCCTTCTTGATACCTTATGCAATTATGTTAGCATTGGCTGGTTTACCTTTGTTCTTTCTGGAGTGTTCACTGGGACAATTTGCTAGCTTAGGTCCAGTTTCAGTTTGGAGGATTCTTCCATTGTTTCAAGGTGTGGGAATTACAATGGTCCTGATATCCATTTTTGTGACAATCTATTACAATGTCATAATTGCCTATAGTCTTTACTACATGTTTGCTTCTTTTCAAAGTGAACTACCATGGAAAAATTGTTCTTCGTGGTCAGATAAAAACTGTAGCAGATCACCAATAGTAACACACTGTAATGTGAGTACAGTGAATAAAGGAATACAGGAGATCATCCAAATGAATAAAAGCTGGGTAAACATCAACAATTTTACCTGCATCAATGGCAGTGAAATTTATCAGCCAGGGCAGCTTCCCAGTGAACAATATTGGAATAAAGTGGCGCTCCAACGGTCAAGTGGAATGAATGAGACTGGAGTAATTGTGTGGTATTTAGCACTTTGTCTTCTTCTGGCTTGGCTCATAGTTGGAGCAGCACTATTTAAAGGAATCAAGTCGTCTGGCAAGGTGGTATATTTTACAGCTCTTTTCCCCTATGTGGTCCTACTCATCCTGTTAGTACGTGGTGCAACTCTGGAGGGTGCTTCAACAGGCATTTCATACTACATTGGAGCACAGTCAAATTTTACAAAACTTAAGGAAGCTGAGGTATGGAAAGATGCTGCCACTCAGATATTTTACTCCCTTTCAGTGGCTTGGGGTGGCTTAGTTGCTCTATCATCTTACAATAAGTTCAAAAACAACTGCTTCTCTGATGCCATTGTAGTTTGTTTGACAAACTGTCTCACTAGTGTGTTTGCTGGATTTGCTATTTTTTCTATATTGGGACACATGGCCCATATATCTGGAAAGGAAGTTTCTCAAGTTGTAAAATCAGGTTTTGATTTGGCATTCATTGCCTATCCAGAGGCTCTAGCCCAACTCCCAGGTGGTCCATTTTGGTCCATATTATTTTTTTTCATGCTTTTAACTTTGGGTCTCGATTCTCAGTTTGCTTCGATTGAAACGATCACAACAACAATTCAAGATTTATTTCCCAAAGTGATGAAGAAAATGAGGGTTCCCATGACTTTGGGCTGCTGCTTGGTTTTGTTTCTCCTTGGTCTCGTCTGTGTGACTCAGGCTGGAATTTACTGGGTTCATCTGATCGACCACTTCTGTGCTGGATGGGGCATTTTAATTGCAGCTATACTGGAGCTAGTTGGAATCATCTGGATTTATGGAGGGAACAGATTCATTGAGGATATAGAAATGATGATTGGAGCAAAGAGGTGGATATTCTGGCTGTGGTGGAGAGCTTGCTGGTTTGTAATTACACCTATCCTTTTGATTGCAATATTTATCTGGTCATTGGTGCAATTTCGTAGACCTAATTATGGCACAATTCCATACCCTGACTGGGGAGTTGCTTTAGGCTGGTGTATGATTATTTTCTGCATTATTTGGATTCCAGTCATGGCTATCATAAAAATAATTCAGGCTAAAGGAAACATCTTTCAACGCCTTATAAGTTGCTGCAGACCAGCTTCTAACTGGGGTCCATACCTGGAACAATATCGTGGGGAAAGATATGAAGGCATGGTAGATCCCAAAAAAGAGGCTGACCATGAAATACCTACTGTCAGTGGCAGCAGAAAACCGGAATGAGATCTCATTGAAAAAAATATGTGATAGTATAATGTGATTTTTCTTAGAATAGGGGGAAACTTATTTATTTGTATGTTAACTGAATAGGAAAATGTACATACTATGTTCATGATAGTGTGATTTTTTTCACATTTAAGCAGGAATGCAATATAAAAATGTGAATCTCTTAATTCTCAGCCATGTGCTTATTATATTTCTTTTTAGATTGTCTATCTGTATAACACACACGCACACACCTAACAGTCTCTATTTCACAATTATATTTTTGTAAATAGTATATGCATTTTTAATACATTGGAGGCTTTATTTTGAGCTAATTTCTTAGAGAATAGTTATATTTTCTATTACACAAGTTTAAAAATATTATTTACTTGTATTTTCTTAATATACAATCTTTCTTTTCCACAAATATGAGTGGGAAATAAATCAGTACATTTAAAAGAAAGTGTTAAAACTTAAGGCCTCACTTAATTAGAAACGTGATAAATATATGGACAAATGGACTATATATACTATAAGAGGACTGTAGTTTAATACTTTTTACCCAAATATGTTTAAAAACTTCATGCATTTGTTACAGCTCATGTTTTCTATATGAACTTAGTCACTAATGTTCTTTATAAAAAGTGAAATAAGATGGAAAAATAAGGATCCTACAGCCAGTAAGTGATAAATCTAGAAAATTGAGTTTTGAGTACCTCTTTTCCCATATACAATCTTCCTTCCTTAGGTAATTTGGAAGAAAACTATGACCCATTTAATTTCTATTGTGTTTCACAAAATTAAGTGTTGTTCATTATACTCTCTGAAATATAGGCTTAATTTCCAATAGAATATGGACTTAAATGTTAATGAGAAAATGGCTTTAATCAATTCTAGCATTTTATTACTGTAATACAGGGCTGATAGAGTGATTTTGTCTTATATGAATAAGTTACTACTTACAGGTGATAACTTACATACTATTGGAAGAGAAACTTGTCAAACTTGTCAGGAATGAGGAAAGCCAAATTAGAAAATCCTATGTCCTAGTTTCCTTACCAAGGATAATTAAATATATCACTAAGAGCTTTATATATTGATTATATATTGTTGACAACTGGTTTAAGCATCATAGCCTATGATGATAAACACTGCCTATATATGTAAAGAACTTTTCATCAATTCTTAAATTTCTTAACCtaggcttcagggaacatatgaaaccaaaattatatggaacattttctgtgtgtacatgtacatgcatttttctagggagagagttcgtaggcttatcagaatatcaaggaaaactgtgacctaaagaagtttaagaaccacATACACTGCTGCTGGCTTTTTGTGCTTGGCAAATGAGTGACAATAGAAGAAATAATTTTTCTTACACATTTTAAAACATTTTCTCTTCCTTGTGATTGAAGATGAAAGGAGTAAGAAATTAAGGCATTTGTTTAATTTATACTGGTAATTTATTTAGGGGGGATGGGACATGAAGGTAGGTAAATAGGTAGGCCTCTAATTGAACCACCTCTCTAAGTTATGTACATATATATAAGCTGAAATTGTGTTTGACATTCTGAGGGTTTTCTTTTTCTTTTTCCtttttttttttttttttttttttttGGTGGGGGGCTGGGGGTcagagtctcattctgttgcccaggctggagtgcagtggcacgatctcagcttactgcaacctctgccttctggattcaagtgattctcctacctcagcctcctgagtagctgggactacaggtgcccgccaccacaccagctaatttttgtatttttagtagaggctaggtttccccatgttggccaggctggtctcgaactcccaacctcaagtgatctgtctatctcggcctcctagagtgctgagattacaggtgtgagccaccgtgcccggccCATTCTGAGGGTTTTCTTTGAAGACAGGTCAAATGCTGTTAGTAAGTTTCAAGAGATTGTTAATTCCTTAGTTATACCAGATTTTATAAAATATTTGAGACTAGATGGCTAACAAGAGGTTAGAAATACTTTTCCTTAATTTTAATCCACATTATGTTACATGCATTCTACCACTACATTTGGTACTATTTAAGGTGTGCAATTTTCTATAGGTGACTTTTGCAATTCAGGGAAGATTTGGGCATTTTAAATGAAAGAATATCTAATTGGGGGAAGTGTGAAGGGAAAGAAATTCTTTTCAAAAGCTGACCACAAAGAGTAGTTAAAAGTTTTTGTCATTATCTTCACAAGTGTGTAAAGCACAGATCTTAACAGAGTGCTTGGCATATTGTAGGGTGTTCAATGGTGGTTTTTATTATTATTACTCAGATTCAACAGTGGCAAGAAACATCATTCTACATAATGGAAAACATTTCCATCAAATCCCACTTACTTTAATGTGAACTTGGAGATAATTTATGGTACTGTATTGTAAACCATTAATGAAAACTTTTTCACAGTTGAGTGAAATTAAAATCACTATATCTCAA

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