Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name DNAJA1P3
Plot displaying the genomic locations of a retrocopy (in chrB1) and its respective parental gene (in chrD4). Each line represents a retrocopy.
Species Felis catus
Coordinates chrB1:158652395-158653769  UCSC
Strand -
Parental Sequence XM_003995550.5
Parental seq. overlap 1189 bp
Parental seq. overlap (%) 49.1%
Genomic Region Intergenic
Retrocopy Summary DNAJA1P3, located on chrB1:158652395-158653769, is a retrocopy of the parental gene DNAJA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DNAJA1
Full Name DnaJ heat shock protein family (Hsp40) member A1
Also known as -
Coordinate chrD4:57289594-57300800
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens DNAJA1P2
Chimpanzee Pan troglodytes DNAJA1P2
Bonobo Pan paniscus DNAJA1P2
Gorilla Gorilla gorilla DNAJA1P2
Orangutan Pongo abelii DNAJA1P2
Gibbon Nomascus leucogenys DNAJA1P6
Green monkey Chlorocebus sabaeus DNAJA1P2
Crab-eating macaque Macaca fascicularis DNAJA1P4
Baboon Papio anubis DNAJA1P3
Golden snub-nosed monkey Rhinopithecus roxellana DNAJA1P7
Marmoset Callithrix jacchus DNAJA1P9
Greater mouse-eared bat Myotis myotis DNAJA2P2
Egyptian rousette Rousettus aegyptiacus DNAJA1P8
Rhesus Macaca mulatta Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DNAJA1P3
TCCTTCCTCCTCCCCCACACTGGCCTCAGCCCACTCACCAGCTGTAGAAAATGGTGAAAGAAACCACTTAGTATGATGTTTTTGGGAGTCAAACCCAATGCCACCTAGGAAGAATTAAAAAAGGCTTACAGGAAACTGGCCTTGATGTACCACCCTGATAAAAATCCAAATGAAGGAAAGAAGTTTAAAGAGATTCAAGCTTATGAAGTGCTGTTTGATGCAAAGAAAAGGGAATTAAATGACAAAAGGGAGAACAGGTAATTAAAGAAGGTGGAGCTGGTGGTAGTTTTGGCTCCCCCATGGAGAACTTTAATACATTTTTTGGAGGAGGAGAAGGAAGGATGCAGAGAGAAAGGAGAGGTAAAAATGTTGTATATCATTCTCAATAACCTTATATTTATATAATGGTGCAACAAGAAAACTAGCTCTGCAAAAGAACATGATTTGTGACAAATGTGAGGACTGAGGTGGTAATGATGTTGTCCCAATTACCAAAGTACTGGAATGCAAATAAGAATTCATCAAATAGGACCTGGAATGGTTCAGCACATCCAATCTGTGTTCATGGAGTACCAGGCCATGGAGAATGGATCACTTGTAAAGATAGATGTAAAAGCTGCAGTGGAAGGAAAAAAAAAAGCTGCAGTTCAAGAGAAGATTTAGAAATTCCTATTAACAAAGGCATGAAAGATGGCCAGAAGATAACATTCCATAGTGAAGGAGACCAAGAAGAAGCACTGGAACCAAGGGATATTATCATTATTTTAGACCAGATGGACCATGATGTTTTTATTGAGCAAGAAGACCTTTTCATGTGTATGGATGTACAACTGGTTGAAACACTGTGTGACTTTCAAAAGCCAATATCTACTCTTGACAACTGAACCATCCTCACCACCTCTCATCCTGGTCAGATTTTCGAGTATGGAAACATCAAGGATATGCTAAATGAAGGCATGCCAATTTATCATAGACCATATAAAAAGGGTTGCCTAATCATGCAATTTAAGGTAAACTCTCCTGAGAATAACTCTGTCTCCTGATAAACTCCCTTATCTGGAAAAACTCCTACTCGAGATGAAGGAAGTTACTAGAGATCGATGAAACGGAGAAGGTGGAACTGGTGAACTATGATCCAAATCAGGAAAGGAAGTGCCATCACAATGGAAAATCATATGAAGATGATGAACATCATTCTAGGGGTGGTGTTCAGTGTCAGACCTCTTAATGGGGCCAGTGAATACCACTGCTGGCATTTTATATGTAGTGGTGAATGAGTAAAGGATTATAATCATAGCTTACTACTTGCTATAGTTTTCAATATTCAACTATAGTTTTTAAGTTAAATGAAGAATAAACT
>XM_003995550.5
CCGTCGAGTGACGCGCCAGGACTCGGCTACAAAAGAGGACGGCTGCGGCGCGCCGGGCGGAACTTTCCAGAACGCTCGCTGAAAAGCGGAGGAGCGGCGGCTGCCCGAGCTGCGCCCAGCAACGCGCTCCTTCCCGCTCCCCCACACCGGCCTCGGCCCCCTCACCGGCTGTAGAAAATGGTGAAAGAAACTACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAGGAAGAATTGAAAAAGGCTTACAGGAAATTGGCTTTGAAGTACCACCCTGACAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTATGAAGTTCTCTCTGATGCGAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCAGGTGGTGGTTTTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAGAGGAGAGGTAAAAATGTTGTGCATCAGCTCTCTGTAACCTTAGAAGATTTATATAATGGTGCAACAAGAAAACTAGCTCTGCAAAAGAATGTGATTTGTGACAAATGTGAAGGCCGAGGTGGTAAGAAAGGAGCGGTAGAATGTTGTCCCAATTGCCGAGGTACTGGAATGCAAATAAGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAATCTGTGTGCATGGAGTGCCAGGGCCATGGGGAACGAATCAGTCCTAAAGATAGATGTAAAAGCTGCAACGGAAGGAAGATAGTTCGAGAAAAGAAGATTCTAGAAGTTCATATTGACAAAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCTGGACTGGAACCAGGAGATATTATCATTGTTTTAGATCAGAAGGACCATGCTGTTTTTACTAGGCGAGGAGAGGATCTTTTCATGTGTATGGACATACAGCTGGTTGAAGCACTGTGCGGCTTTCAAAAGCCAATATCTACTCTAGACAACAGAACCATTGTCATTACCTCTCATCCAGGTCAGATTGTCAAGCATGGAGATATCAAGTGTGTGCTGAATGAAGGCATGCCAATTTATCGTAGACCATACGAAAAGGGTCGCCTAATCATCGAATTTAAGGTAAACTTCCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTCTTTGCTGGAAAAGCTCCTACCTGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGACCAGGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGAAGGCGCCATTACAATGGAGAAGCGTATGAGGATGATGAACATCACCCTAGGGGAGGTGTTCAGTGTCAGACCTCTTAATGGGGCCAGTGAAGAACACTGCTGGCATTTTATATGCAGTAGTGAACGAATGAAGGACTATAATCATAGCTCACTACTTGCTATTATTGTTTTTGTTTTAATATTCAACTATAGTAGTGTTTTAAAAGTTAAATGAAGAATAAAAAATATAAAAGCTCTGACTTTGCCCTGTATGTATGATGAATTCAGTGTGCAAGATAAGTTTAATACTTGTAAAAACTACTTTTAAAAAATCTCCCCTAGCATTTGTTAGAGGCCCGACCTTGTAATTGATTTCAGCTCTATGTACATGAACTAGTTTAGACTGAAAATGCTAGGTAAATGTATTGACTTCAGTGTATGACCCTTAATTGTTAAGCTATGAAGTTAAAACTTGTGTTTAACTGGCAATCTGAAAAAGAATTTGTAGAGAAGTGTTGGTCTGTAGTTCTATTAAGTGGGATTCATTGTGATGCTTCTGCATTTATTCTGTTGCCTCAACTGTTACTTAAAGATGGCATGCTGTGTAATTTGGCCTGTGGTATCAGTGGTGGAAAGGATACCTTTCTAAAGAAGGGGTTTATCATAATCTGCTGTTTGAGGGCTTGCACTTGTAGAACTGCATTCCCTTCTGTGCCATCTTTTTTTTTAatatatatatatatatatacatatatatatatacatatatatatataCATACACACACACACCAGTCCTGGTTACACTTTTTTTCCTTCTCTTTGGACCATGATAAGCTTCAGAGTAGTGACTTCGGGAGCAGGGTAACTTAGAGTGAAGAGATATTTACACAGAAAAGTAAATTTGCATGTATGAGCTAGGAAGGTGTTTTTAGGTATGTTACAGGCTTACTTTAAACAATTTAACTTACGCTCCGAAGTAACTGTAATTTAATGTTGGTAGTATAGCAAATTATGATGAATAGCTTTAATTGTATGTTTAAAAGTCATGTTCACAAGCTTAAATCTGGATATCAGAATTAAGCAATTCTTGAAATGTATGAATGTCTCCTTAATACACTGATTACAAAGCA

Publications

PMID - Link Title