Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NT5C3AP1
Plot displaying the genomic locations of a retrocopy (in chrC2) and its respective parental gene (in chrA2). Each line represents a retrocopy.
Species Felis catus
Coordinates chrC2:58387867-58388712  UCSC
Strand +
Parental Sequence XM_006929293.3
Parental seq. overlap 704 bp
Parental seq. overlap (%) 38.9%
Genomic Region Intragenic (CD96)
Retrocopy Summary NT5C3AP1, located on chrC2:58387867-58388712, is a retrocopy of the parental gene NT5C3A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NT5C3A
Full Name 5'-nucleotidase, cytosolic IIIA
Also known as NT5C3
Coordinate chrA2:125613824-125668198
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla NT5C3AP1
Gibbon Nomascus leucogenys NT5C3AP1
Green monkey Chlorocebus sabaeus NT5C3AP1
Crab-eating macaque Macaca fascicularis NT5C3AP1
Rhesus Macaca mulatta NT5C3AP1
Golden snub-nosed monkey Rhinopithecus roxellana NT5C3AP1
Mouse lemur Microcebus murinus NT5C3AP1
Sheep Ovis aries NT5C3AP1
Dolphin Tursiops truncatus NT5C3AP1
Panda Ailuropoda melanoleuca NT5C3AP1
Greater horseshoe bat Rhinolophus ferrumequinum NT5C3AP2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NT5C3AP1
TTGCAACTAAGGAAAAATACTATGTTGTCAAAATTGATTCTGCTTTTACCATAGAAGAAAAATATCCCTTTATGGTAGAAAGACATGCCAAGGCACATAGGTTCCTTGTTGAACAAGCTTTTCCCAATGCTAAATTCAAATAAATTGTGGAAGAATCCAATGTTATGTTCAAGGAAGAATATAAAAATTTATTTGAAAAACTCCAAAAACACAGCATCCCTGTGTTCGTATTTTTGGCTGATAATGGTGATGTGCTTGAGAAGGTTATCCATCAAGCTGGTATTTATCATCCAAATGTCAAAGTAGCGTTTATTCATGGATTTTGATTAAAATGGAGTCTCAAAAGATTTAAAGGAGAATTAACTCATGTATTTAACACACATCATGGTGGCTTGAAGAACACAGAATATTTCAATCAATTAAAAGACAGTAGAAACGTAATTCTGCCGAGAGACTCTCAAAGAAACTTAAGGATGGCAGATGGAGTAGCCAATGTGGAACACATTCTGAAGATTGGATATCTAAATGATAAAGTGGATGAGCTTTTAGAAAAGTATTATGTTAGTGAGAGATGAATCATTAGAGGTAGCCAACTCTATCTTACTGAGGATTCTATAAGGAAGTACTCTTCAGGAAGACCTCTTGCCTGTGGGAGCAATTGATACAACAATTGCTCATCTCTTTGTCTCGCTGAAAGACTCTTATGTATAATACATTCTCGCTCTTAAAGTTTTTTCTTTACATTACCTAAGTGTTTTCAGACATGCTGAATCCATCAACTGGAAGCTCCTTTTTCTTCATCTCTCTCAACACACTCCCCACTATATTTTTTTAACAGATTAAAAA
>XM_006929293.3
GCATAGAGCTTAGCCAGGGCTTTTGGAACCGCCCTCAGTTGCACCTTGTGCTATATTAGTACTTCTCAGACAGGAAGAATTTTCTTTCGCTGGTGTAGCTGGTCCGGTTACTTTCAGGTGTATATCCAAGCCCTGCATCCCTGGATATTGCTTACCACCTATGCTGTTGTTCTAGGACAAATTCAAGGACAGAAGAACTCAGAGTACCCTTAGGAAGATTGGATAACCAAGAAATGCCTAATCAAGACTCTGCTGTGCATGTGAAAATGATGCCAGAATTCCAGAGAAGTTCCGTTCGAATCAAGAACCCGGCAAGAGTAGAAGAAATTATCTGCGGTCTTATTAAGGGAGGAGCTGCCAAACTTCAGATAATAACAGACTTTGATATGACACTGAGTAGATTTTCCTACGAAGGCAAAAGATGCCCAACATGTCATTATGTCATTGACAACAGTAAACTGGTTACAGATGAATGTCGGAAAAAGTTAATGCAACTAAAGGAAAAATATTATGCTATTGAAATTGATCCTATTCTTACCATGGAAGAGAAGTACCCCTATATGGTAGAATGGTATACTAAAGCACATGGCTTGCTTATTGAACAGGCTTTACCAAAAGCTAAACTTAAAGAAATCGTGGCAGAATCTGATGTTATGCTCAAGGAAGGGTATGAGAATTTCTTTGATAAGCTCCAACAATACGGTATCCCTGTGTTCATATTTTCGGCTGGTATCGGTGATATACTAGAGGAGGTGATCCAGCAAGCTGGCGTTTATCACCCAAACATCACAGTAGTGTCCAACTTCATGGATTTTGATGACAATGGGGTGCTCAAAGGATTTAAAGGCGAACTAATTCATGTATTTAACAAACATGATGGTGCCTTGAAGAACACAGAATATTTCAATCGGCTAAAAGATAATAGCAATATAATTCTGCTGGGAGATTCCCAAGGAGATATAAGAATGGCAGATGGAGTAGCCAATGTTGAACACATCCTGAAAATTGGATATCTAAATGATAGAGTGGATGAGCTTTTAGAAAAGTACATGGACTCTTACGATATTGTTCTAGTAAAAGACGAATCACTGGACGTAGCCAACTCTATCTTACAGAAGATTCTATAAACAAGCATTCTTCAAGAAGACCTCTGTGCTGTGGGTGCAATTGATGCAGGAACTGCTCACCTGTTCATCTTGCTGAAAGACTTCTATTTATAATACATTCTTGCTCTTGAAGTTTTTTCTCTACGTTACTGAGGTATTTTCAGACATACTGAATCCATCAACTGGAAACTCCTTTTTTCCTCACCTCTCTCAACACACTCCTCAACTATGTTTTTTAACAGTTaaaaaaaaaaaaaaaaaCCTTAAAGGTAAAATTTGAAAAATAACTCCATGAATTAATTTCCAGAGTGAATTTTGTAGTTTAATGTTATCATGAGGTTTTTGAGGAAACTTTTTACTCTGGGGAAAAAGTCTGTATAAGTTTAAAAAGAAGTTTTATGAAATGATGAAATAATGTGCATGATTTTAAGTGTTGCTGTTTTTGTCATGTGGGTGAATTATGCTGATGATATCACCATCTCCTGAAATTGTATTATGTTTGGTTATTTTGTTCTTGAAAGTCAGTATTTATCAGAAAATAATGGCACTTGGTGTTTGAAAAACCATTGGTATCCACATATCACTAATCATTACAAAATGTTCTATATTGATGCACTGATAATACACATGAAGTGAAAAGCCTTTTAAATTGTACTGTCAAGACCATTGTTGttcatttattcaacaaatatttattaagctc

Publications

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