Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SUMO1P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr2B). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr1:81476617-81477521  UCSC
Strand -
Parental Sequence NM_001133060.1
Parental seq. overlap 820 bp
Parental seq. overlap (%) 55.2%
Genomic Region Intergenic
Retrocopy Summary SUMO1P1, located on chr1:81476617-81477521, is a retrocopy of the parental gene SUMO1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SUMO1
Full Name N/A
Also known as -
Coordinate chr2B:89017471-89049889
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SUMO1P2
Chimpanzee Pan troglodytes SUMO1P2
Bonobo Pan paniscus SUMO1P2
Gorilla Gorilla gorilla SUMO1P2
Gibbon Nomascus leucogenys SUMO1P2
Green monkey Chlorocebus sabaeus SUMO1P11
Crab-eating macaque Macaca fascicularis SUMO1P2
Rhesus Macaca mulatta SUMO1P2
Baboon Papio anubis SUMO1P1
Golden snub-nosed monkey Rhinopithecus roxellana SUMO1P3
Marmoset Callithrix jacchus SUMO1P5
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SUMO1P1
GACCCCTGGGTGAAGCCACTGTCACCTATGTAAGATCAGGAGGCAAAACCTTCAACCGATGACTTGGGGGATAAGAAGGAATGAGAATATGTTAAACTCAAAGTCATTGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCAAAGAATCATACTGTCAAAGACAGGGAGTTCCAATGAATTCACTCAGATTTGTCTTTGAAGATCAGAGAATTGCTGCTACTCATACTATAAAAGAACTGGGAATGGAGTAAGAAGATGTGATTGAAGTTTATCAGGAGCAAATGAGGTCATTCAGTCGTTTAGGTATTCTTTTATTTGTTTTTCTTTTCCATCAATCTTTTTTTATTTTTAAAATAGTTCTTTTGTAATGTGGTACTCAAAATGGAATTGAAAACTGGCACTCCATCTCTTTAAAACATCTGGTAATTTGAATTCTAGTGTTCATTATTCATTATCATTTGCTTTCATTGTGCTGATTTTTGGTGATCAAGCCTCAGTTCCCTTCGTATTGCCCTCTCCTTTTTAAAAATTACATGTGTGCACAGAGAGACCACCTTTTTTAGGACTGTGCATTTTCAGGCTTGTAGCAATAAGTAAGATCGACCAAGGCAAGTGTTTGTAAAGACTTCCCAATTGGCCCTAAAGTTCTAGCATGTGATTGCTTCACTCCCGGACTGTGACTTTCACTGGGGGATGTAAGCTTTTCAGAGAACTGAAACGTGGAAAAATGACCTTTCCTTAACTTGAAGATAGCTTTAAAATTAGAGAGTCTAGACCAAAAGAAAAGGAATAGCATATTGGAGTCAAGACGACGATAAGGTGAGAGTAATGACTAACTCCAAAGATGGCTTCACTGAAGAGAATGCATTTTAAGATC
>NM_001133060.1
TTGTGCTGTGGGGAAGGGAGAGGATTTGTAAACCCCGGAGCGAGGTTCTGCTTACCCGAGGCCGCTGCTGTGCGGAGACCCCCGGGTGAAGCCACCGTCATCATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGAAGGAAGGTGAATATATTAAACTCAAAGTCATTGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCAAAGAATCTTACTGTCAAAGACAGGGCGTTCCAATGAATTCACTCAGGTTTCTCTTTGAGGGTCAGAGAATTGCTGATAATCATACTCCAAAAGAACTGGGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAACAAACGGGGGGTCATTCAACAGTTTAGATATTCTTTTTATTTTTTTTTCTTTTCCCTCAATCCTTTTTTATTTTTAAAAATAGTTCTTTTGTAATGTGGTGTTCAAAACGGAATTGAAAACTGGCACCCCATCTCTTTGAAACATCTGGTAATTTGAATTCTAGTGCTCATTATTCATTATTGTTTGTTTTCATTGTGCTGATTTTTGGTGATCAAGCCTCAGTCCCCTTCATATTACCCTCTCCTTTTTAAAAATTACGTGTGCACAGAGAGGCCACCTTTTTCAGGACATTGCATTTTCAGGCTTGTGGTGATAAATAAGATCGACCAATGCAAGTGTTCATAATGACTTTCCAATTGGCCCTGATGTTCTAGCATGTGATTACTTCACTCCTGGACTGTGACTTTCAGTGGGAGATGGAAGTTTTTCAGAGAACTGAACTGTGGAAAAATGACCTTTCCTTAACTTGAAGCTACTTTTAAAATTTGAGGGTCTGGACCAAAAGAAGAGGAATATCAGGTTGAAGTCAAGATGACAGATAAGGTGAGAGTAATGACTAACTCCAAAGATGGCTTCACTGAAGAAAAGGCATTTTAAGATTTTTTAAAAATCTTGTCAGAAGATCCCAGAAAAGTTCTAATTTTCATTAGCAATTAATAAAGCTATACATGCAGAAATGAATACAACAGAACACTGCTCTTTTTGATTTTATTTGTACTTTTTGGCCTGGGATATGGGTTTTAAATGGACATTGTCTGTACCAGCTTCATTAAAATAAACAATATTTGTAAAAATCGTACTAATGCTTATTTTATTTTAATTGTATAGAAAGAAAAAAATGCCTAAAATAAGGTTTTCTTGCATAAATACTGGAAATTGCAAATGGTACAAATTTTTTCTTCATtaccgtacagtgatgatgttaatgactttgaagcactgaaagttactgaagtgccttctgaatcaaggatttaattaaggccacaatacctttttaatactcagtgttctgtttttttaaaaacttgatattcctgtatggtacgtatATATGATACAGTTACCTAATCATGTTGAATAAATGGGCATGCCAAAAA

Publications

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