Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL6P10
Plot displaying the genomic locations of a retrocopy (in chrB2) and its respective parental gene (in chrD3). Each line represents a retrocopy.
Species Felis catus
Coordinates chrB2:98252381-98252991  UCSC
Strand +
Parental Sequence XM_006938486.4
Parental seq. overlap 510 bp
Parental seq. overlap (%) 54.8%
Genomic Region Intergenic
Retrocopy Summary RPL6P10, located on chrB2:98252381-98252991, is a retrocopy of the parental gene RPL6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL6
Full Name ribosomal protein L6
Also known as -
Coordinate chrD3:10253846-10257652
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Cow Bos taurus RPL6P3
Sheep Ovis aries RPL6P4
Dolphin Tursiops truncatus RPL6P7
Dog Canis familiaris RPL6P9
Pale spear-nosed bat Phyllostomus discolor RPL6P12
Greater horseshoe bat Rhinolophus ferrumequinum RPL6P14
Egyptian rousette Rousettus aegyptiacus RPL6P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL6P10
CTTGCAAGATGGCAGGTGAAAAGGCTGAGAAACCAGATATGAAGGAGAAGAAACCTGAAGCCAAGAAGGCTGAAGCAAAGTTAAAAAGTGTAACTTCAAGGCCAAAACACTCAACAGGGTAAGCCTCAGTGCAACCAAAATCCCATCCTAGTCAAAGGACTTGGCAAATATTCCTGATCTGCTATGTACAAGAGGAAATAGCAGCTAAATTCAGGATTGAAAAAAAAGGAACAATGTTCTTGCTACTGTCACAAAACCAGCTGGTGGTAACAAGAATGGTGATACCAACTAGTTAAACTTCACAAAGTGCCCAGACACAATCCTACTGAAGATGTTCCTCAAAAGCTGTTGAGCCACAGCAAAAACCCCTCAGACAGCAGGTGAAAAACCTGAGCTACAATCACTCCCGGGACCATTCTGATCATCCTCTCTCAGCACCACAGAAGTAAGAGGCTGATTTTCTCAAGGCATCTGAGCAGGGGCTTGCCACTTGTGACTGGACCTTTGATCCCCAATCCAGTTCTCTACATAGAACACAAAAGAAATTTGTCATCACCACCCCCACCCAAACTGATATCAGTGGTGTGAAATCCCAAAACATCTCACTGATG
>XM_006938486.4
CTTTTTAATCTGTGTATTGCTAGATGGCGGGCGAAAAAGCTGAGAAGCCGGATGCTAAGGAGAAGAAACCTGAAGCCAAGAAGGCCGATGCTGGTGGCAAGGTTAAGAAGGGTAACCTCAAGGCTAAAACGCCAAAGAAGGGGAAGCCCCACTGCAGCCGAAACCCTGTCCTAGTCAGAGGAATTGGCAGATATTCCCGATCGGCTATGTATTCGAGAAAGGCCATGTACAAGAGGAAGTATTCAGCAGCTAAATCCAGGATTGAAAAGAAAAAGAAGGAGAAGGTTCTTGCTACTGTCACAAAACCAGTTGGTGGTGACAAGAATGGTGGTACCCGAGTGGTGAAACTTCGCAAAATGCCTAGGTATTATCCTACGGAAGATGTGCCTCGGAAGCTGTTGAGCCACGGCAAAAAACCTTTTAGTCAGCATGTGAGGAAACTGCGAGCTAGCATCACTCCTGGGACCATTTTGATCATCCTCACTGGGCGCCACAGAGGCAAGAGAGTGGTTTTCCTGAAGCAACTGAGCAGTGGCTTGCTACTTGTGACTGGACCTCTGTCCCTTAATCGAGTTCCTCTGCGTAGAACACACCAGAAATTTGTCATTGCCACCTCCACCAAAATTGATATCAGCAATGTGAAAATCCCCAAACACCTCACTGATGCTTACTTTAAGAAGAAGAAGCTGCGTAAGCCCAGACACCAGGAAGGTGAGATCTTCGACACGGAGAAAGAGAAATATGAGATTACAGAGCAGCGCAAGGTTGATCAGAAAGCTGTGGACTCGCAAATTCTGCCAAAAATCAAAGCCGTTCCTCAGCTTCAGGGCTACCTCCGCTCTGTGTTTGCTCTCACGAATGGAGTTTACCCTCACAAATTGGTGTTCTAAATTTCTTACAAAGAACCTAATTAAATAACAGATCCGTC

Publications

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