Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS3AP6
Plot displaying the genomic locations of a retrocopy (in chrB2) and its respective parental gene (in chrB1). Each line represents a retrocopy.
Species Felis catus
Coordinates chrB2:130519111-130519306  UCSC
Strand -
Parental Sequence XM_003984944.3
Parental seq. overlap 162 bp
Parental seq. overlap (%) 18.1%
Genomic Region Intergenic
Retrocopy Summary RPS3AP6, located on chrB2:130519111-130519306, is a retrocopy of the parental gene RPS3A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS3A
Full Name ribosomal protein S3A
Also known as -
Coordinate chrB1:78514946-78519241
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS3AP23
Chimpanzee Pan troglodytes LOC461536P18
Bonobo Pan paniscus LOC100975318P18
Gorilla Gorilla gorilla LOC101144197P15
Orangutan Pongo abelii RPS3AP16
Green monkey Chlorocebus sabaeus LOC103236378P23
Crab-eating macaque Macaca fascicularis RPS3AP12
Rhesus Macaca mulatta LOC703455P12
Baboon Papio anubis LOC101003493P16
Golden snub-nosed monkey Rhinopithecus roxellana RPS3AP8
Mouse lemur Microcebus murinus LOC105878632P2
Pig Sus scrofa RPS3AP1
Cow Bos taurus RPS3AP12
Dolphin Tursiops truncatus RPS3AP11
Horse Equus caballus RPS3AP9
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS3AP6
CATGATGTCTTTGATAGAAAAGTAAAAGTGCTATAGAAGCCTAAATCTGAATTGGGAAAATTCATGGAACTTCATAGTGAAGGTAGTAGTTCTGAAAAGCTAGGAAGGGTGAGACAAGTTCTAAAGTTTAACAAACTGATGGGTATGACTCAGCCGTCCAAGAATTTATATAAAATTCAGACTTTTAATGCTGACG
>XM_003984944.3
TCGCGCGAGTTACACTTCCGCCCTTTTGGCTCCCTGAGCAGCGCCATGGCGGTAGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCAAAGAAAGATTGGTATGATGTAAAGGCACCAGCAATGTTTAATATAAGAAATATTGGAAAAACACTAGTCACGAGAACTCAAGGAACCAAAATCGCATCTGATGGCCTTAAGGGTCGTGTGTTTGAAGTAAGCCTGGCTGATTTGCAGAATGATGAAGTTGCATTTAGGAAATTCAAGCTAATTACTGAAGATGTTCAGGGCAAAAACTGCCTGACTAATTTCCATGGCATGGATCTTACCCGGGACAAAATGTGCTCCATGGTCAAAAAATGGCAGACCATGATTGAAGCTCACGTTGATGTCAAAACTACCGATGGGTATTTGCTTCGTCTCTTTTGTGTCGGTTTTACTAAAAAACGCAACAATCAGATTCGGAAGACCTCTTATGCTCAGCACCAACAGGTCCGCCAAATTCGGAAAAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTTGTCAATAAATTGATTCCAGACAGCATCGGAAAAGACATAGAGAAGGCTTGTCAGTCTATTTATCCACTTCATGATGTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAGCTCATGGAGCTTCATGGTGAAGGTAGCAGTTCTGGAAAAGCTACTGGGGATGAGACCGGTGCTAAAGTTGAGCGAGCTGATGGATATGAGCCACCAGTCCAAGAATCTGTTTAAAATTCAGACATTTAATGGTGACAAATAAAAAATCTTATTTGTGATGTTTAA

Publications

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