Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS4XP16
Plot displaying the genomic locations of a retrocopy (in chrF1) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Felis catus
Coordinates chrF1:20262916-20263752  UCSC
Strand -
Parental Sequence XM_004000627.4
Parental seq. overlap 688 bp
Parental seq. overlap (%) 74.9%
Genomic Region Intergenic
Retrocopy Summary RPS4XP16, located on chrF1:20262916-20263752, is a retrocopy of the parental gene RPS4X. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS4X
Full Name N/A
Also known as RPS4
Coordinate chrX:61304662-61310152
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Pig Sus scrofa RPS4XP5
Cow Bos taurus RPS4XP15
Sheep Ovis aries RPS4XP8
Dolphin Tursiops truncatus RPS4XP2
Horse Equus caballus RPS4XP1
Dog Canis familiaris RPS4XP8
Panda Ailuropoda melanoleuca RPS4XP11
Velvety free-tailed bat Molossus molossus RPS4XP16
Greater mouse-eared bat Myotis myotis RPS4XP12
Greater horseshoe bat Rhinolophus ferrumequinum RPS4XP26
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS4XP16
TCTTTTCATGGCTACCACAGCCATGGCTCCTGGTCCCAAGAAGCATCTCAAGTGTGCAGCAGTTCTAAAGCAGTGGATGCTAATAATTTGATCAGTGTGTTTGTTGCTCATCCATCTACCAGGCCCCATAAGCTGAGAGAATGTCTTCTCCTCATCATTCTCCAAGGAACACACTTAAGTATGCTCTGACAGGAGAGGAAATAAAGAAGATCTGCATGCAGCAGTCCAATAAGGTTGATGGCAAAGTCCAAACTGATACAACCTACCTTACTGGCTTAATAGATGTCATGGGCATTGACAAGACTGAAAAGAATTCCTATCTCATCTGTGACACCAAGGGTCCTTTGCTGTTCATTATATTACACCTTAGGAAGCCAAGTAAAAGTTGTGTGAAGTAAGAAAGGTCTTTCTGGGCACAAAAGAAATCCCTCATCTGGTGACCCATGATGCTCACACCAGCTGTCCCCCTGATTCCTCACCAAAGTAAATGAAACTATTCAGATTGATTTGGAGACTGGACAGATTACTGATTTCATCAAATTTGACACTGGTGACCTGTATATAGTGATCAGAGGTGCTAACATGTAAAGAATTGGTGTGACCACCGATGAAGAGAGACATCCTACATCCTAGTTCTTTCGGTGTTGTTCCCGTGAAAGACGCCAGAGGCAACAGCTTTGCCTCTCAACTCTCCAACATTTTCATTATTGGCAAAGGCAACAAAACATGGATTTCTCTTGCCTGAGGAAAAGGGATCCACTTCACCATTGCTGAAGGACAGACAAGACACTGGCAGTCAAACAGAACAGTAGGTGAAATGATCTCTAGTGATGTGAC
>XM_004000627.4
TTTTCTCGCGTACCGGAAAGAGGCGGTCCTCTTTTCGTGCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACATCTGAAGCGGGTAGCAGCTCCAAAGCATTGGATGCTGGATAAGCTGACCGGTGTGTTTGCCCCTCGTCCATCTACTGGTCCCCATAAGTTGAGAGAGTGTCTCCCTCTCATCATTTTCCTAAGGAACAGACTTAAGTATGCCCTAACAGGAGATGAAGTAAAGAAGATCTGTATGCAGCGTTTTATTAAGATTGATGGCAAGGTCCGAACTGATATAACCTACCCTGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGGGAGAATTTCCGCCTGATCTATGACACCAAGGGTCGCTTTGCTGTTCATCGGATCACACCTGAGGAGGCCAAGTATAAGTTGTGCAAAGTGAGAAAGATCTTTGTGGGAACAAAAGGAATCCCTCATCTGGTGACCCATGATGCTCGCACCATTCGCTATCCTGATCCCCTCATCAAGGTGAATGACACCATTCAGATTGATTTGGAGACTGGAAAGATTACTGATTTCATCAAGTTTGATACTGGTAATCTGTGTATGGTGACCGGAGGTGCTAATCTGGGAAGAATTGGTGTGATCACCAACAGAGAGAGACACCCTGGTTCTTTTGATGTGGTTCATGTGAAAGATGCCAATGGCAACAGCTTTGCCACCCGGCTTTCCAACATTTTTGTTATTGGCAAGGGCAATAAACCATGGATTTCTCTTCCCCGTGGAAAGGGCATCCGCCTCACCATTGCTGAAGAGAGAGACAAGAGACTGGCAGCTAAACAGAGCAGTGGGTAAAATGGTCCCTAGGTGATGTGATTGGAAGTCTTTACACATAATTAAAGATTGATACAACATGATAAA

Publications

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