Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TMEM184CP1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chrX:82269768-82271332  UCSC
Strand -
Parental Sequence NM_001133715.1
Parental seq. overlap 1289 bp
Parental seq. overlap (%) 29.6%
Genomic Region Intergenic
Retrocopy Summary TMEM184CP1, located on chrX:82269768-82271332, is a retrocopy of the parental gene TMEM184C. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TMEM184C
Full Name N/A
Also known as TMEM34
Coordinate chr4:146416685-146435658
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TMEM184CP1
Chimpanzee Pan troglodytes TMEM184CP1
Bonobo Pan paniscus TMEM184CP1
Gorilla Gorilla gorilla TMEM184CP1
Green monkey Chlorocebus sabaeus TMEM184CP1
Crab-eating macaque Macaca fascicularis TMEM184CP1
Rhesus Macaca mulatta TMEM184CP1
Baboon Papio anubis TMEM184CP1
Marmoset Callithrix jacchus TMEM184CP3
Gibbon Nomascus leucogenys Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TMEM184CP1
CCCATTACAATCTCCTTCAGGCTCTTTTCCCTTGCCACTCGGAGCTGATTTGTACGAAAACATGTTTGCACTTGTACCTGGAGGAACTGGAGACAGTGGGTTCGAACTTTAGCAGTGGTCATCTACCTGGTGTCCATAGTGGTTGTGGTTGCCTTATGCATATGGGGATTACAGAAACTGGAGATTCAAATGCACACCAAAGGCTTAGTTTATTGCCGGAATTGTTTTTGCTGTTGACAATACCTATATCGTTATGGGTTATATTGCTACAGTTAGTGCATTATATGCAACCTAAACTACAAAAACCAATCATAAGGATTCTTTGGATGGTACCCATTTACAATTTAGATAATTAGATACTCCAGCATTGCAATATATGTGCATACCTGCAGAGAATTCTATAAAGCTTATGTCATTTACAACTTTATGAGATTCCTTACCCATTATCTAACTAACCATTATCCAAATCTGGTACTAATTATTGAAGCCAAAGATCAGTAGAAACATTTTCCTCCTTTATGTTGCTGTCTACCATAGACTACGGTAGAAGTATTGCTGTTTGGGCAAACTAGGTATATTGCAGCATACAGTTGTCAGACCATTCACCACCATCATTGTTTTAATCTGTGAACTGCTTGCTATATATGATTAGCTTTTTATATACTTAGACTTATTTGGTTATGATAAACAACATGTCACAATTGTTTGCCATGTAGTGTCTTCTGCTATTTTATAAAAAAACTAAAGGAAGAATGGAGCCCAATCCAACATGTTGGCAAATTTCTTTGTGTAATGCTGGTATTTTTTGTTTCTCTTTGGCAAGTAGTAATTGTTGCTTTGATGGTAAAAGTTGGCATTATTTAAGAAAGGCATGTATGGAAATGGCAAACTGTAGAAGCTGTGGTTCCAGGACTCCAGGACTTTATATCTGCATTGAGAGGTTCCTTGTTGCTATTGCCCATCACTACACTTCCTCATTAACCATATCTCCAAGAAGCAGAACACGGCTCATGCTCTGATTCCTTCCTTGCCATGTGGGATGTTTCAGATATTAGTATTTTTGAACAAGTAAGGCACGTTGGATGGACAGTCAGGAGACATCATAGGAGAAATTTGTTTCCTGAGGATCACAATCAGAATGAGTATACAAGCTTATTATCATCATCATGGAGATGCAATTTCCACTGCCTGTTTTATGTCACTTTAACCCATGGGTCGCTATAAGGATTTGGACACACTGAGACTCCCCAGACTACAGCTACTATGCCTAAAATATCTGAGTAAATtATAATACTGTAGGAGAGAAAAAAAATTCAGATAAATCTGTGGATTCCTGAACAGTGTGGAAATCAAACTGTGCAACTATATTGTATCATTACCTGGTAGTCCATGGCTCAGGATTTTGTGCTTGGGAAAAACCATGAATAATGGGAAATTTCAACACAAAAATAGCTGAAAGCCAGGTACAACTACTGGAG
>NM_001133715.1
GTAGGGGATGTCCCGTGTGAGAGAATGAGGAGATCCTGGGGCCTTACCCACTAGCGGAATCGGGTGAAGAGACGCCTGCCAGTGCGGGAGGTAGGAAGCTCGATCCCCAAAGAAAAGAGCGAGTGGGCAGGCAGCTGCGAGACAGAACCGGAGTGTGCAAGGTCCCTAGAGGCCGGTTCCTGGTCTGTGCTGCTCTCCTGGAAGCCATGGTGCAGGCAGAGCTCAGGGGGATCCCCAGGTGAGAGCAGCCGCTCTGCCTGGGATTCCACCGCAGTACAACTTGGTAGATGCGGGGTGGGGAAGAAAGGATGTTGCCTGCACTGCTCGCCAATAGCACCCTGAGCGGCTACATTTGCAGGAGCAGCAGAAGAAGACACAGCGCCGGTCCAGGAGGCGGCTGGAGCTGTTCGTAAAGTCGCCCGACAGCTTTTTTCTCCGTAGTATGCGAGTTGACAAAACAGCCAGAGAACAGGGCTCCCCATTACAATCTTTTCGAGCTCTTTTCCCTTGCTAACCGGATCTGATTTGTGCGAAAACATGCCTTGCACTTGTACCTGGAGGAACTGGAGACAGTGGATTCGACCTTTAGTAGCGGTCATCTACCTGGTGTCAATTGTGGTTGCGGTTCCCCTATGCGTGTGGGAATTACAGAAACTGGAGGTTGGAATACACACCAAGGCTTGGTTTATTGCTGGAATCTTTTTGCTGTTGACTATTCCTATATCACTGTGGGTGATATTGCAACACTTAGTGCATTATACACAACCTGAACTACAAAAACCAATAATAAGGATTCTTTGGATGGTACCCATTTACAGTTTAGATAGTTGGATAGCTTTGAAATATCCCGGAATTGCAATATATGTGGATACCTGCAGAGAATGCTATGAAGCTTATGTAATTTACAACTTTATGGGATTCCTTACCAATTATCTAACTAACCGGTATCCAAATCTGGTATTAATCCTTGAAGCCAAAGATCAGCAGAAACATTTCCCTCCTTTATGTTGCTGTCCACCATGGGCTATGGGAGAAGTATTGCTGTTTAGATGCAAACTAGGTGTATTACAGTACACAGTTGTCAGACCTTTCACCACCATCGTTGCTTTAATCTGTGAGCTGCTTGGTATATATGATGAAGGGAACTTTAGCTTTTCAAATGCTTGGACTTATTTGGTTATAATAAACAACATGTCACAGTTGTTTGCCATGTATTGTCTCCTGCTCTTTTATAAAGTACTAAAAGAAGAACTGAGCCCAATCCAACCTGTTGGCAAATTTCTTTGTGTAAAGCTGGTGGTTTTTGTTTCTTTTTGGCAAGCAGTAGTTATTGCTTTGTTGGTAAAAGTTGGCGTTATTTCTGAAAAGCATACGTGGGAATGGCAAACTGTAGAAGCTGTGGCCACTGGACTCCAGGATTTTATTATCTGTATTGAGATGTTCCTCGCTGCCATTGCTCATCATTACACATTCTCATATAAACCATATGTCCAAGAAGCAGAAGAGGGCTCATGCTTTGATTCCTTTCTTGCCATGTGGGATGTCTCAGACATTAGAGATGATATTTCTGAACAAGTAAGGCATGTTGGACGAACAGTCAGGGGACATCCCAGGAAAAAATTGTTTCCCGAGGATCAAGATCAAAATGAACATACAAGTTTATTATCATCATCATCACAAGATGCAATTTCCATTGCTTCTTCTATGCCACCTTCACCCATGGGTCACTACCAAGGGTTTGGACACACTGTGACTCCCCAGACTACACCTACCACAGCTAAGATATCTGATGAAATCCTTAGTGATACTATAGGAGAGAAAAAAGAACCTTCAGATAAATCCGTGGATTCCTGAACAGTATGGAAAAGCAAACTGTGCAACTACTACATTATGTCATTACCTGGTATCCCATGGATTTTGTGCTTGGGACAGACCATAAATGATGGAAAATGTCAACACAAAAATAGCTGAAAGCCAGGTACAACTACTGGATTTATATATGTAAGTTTTGTATATCAAAAATAATTGGTCTAAATTTCCTAGACTTAGACTTGATTTCTTAACATTAGGGTATCACATACTCAAATGGTAGACAATGACCCCAACTAAATCTTCCTGATGTTACACTGCTTTATCAAGAGGATGGCCttttttttgttttttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgcaatctcggctcactgcaagctctgcctcctgagttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcatctgccactatgcccagctaattttttttttttttttttttagtagagacagggtctcaccatgttagccaggatggtcttgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccactgcacctggccAAGAATGGACATTaaaaaaaaaaaaaaaaaaaaTCAGTACTTCCTACCACTGCTGCATGAGTATAATGCTCCGGAATTATCAGAAAGCATAATGCAGAAATACGAATTAGTGGAACTTAATCATGTGCCATATAAGCTTACCTAACAAACAGTTATATCTCTATTCCTCAACTGAATGTCTTTCAATAAATAAGAATTTATCATTTATTTTCTGCAACTTTTTTATGTCTCATTCTTTAAACAAACATTAAAAACCCTTAATATTTTAACAAAAATTTCTTGATTAGAGACACAGTGAAAAGTCAAAAAAAAAAGTACTACTTTTCATCAGTGCTATTAAAGGTGGCAGCAAATGTAAATCTTGGCTGAATGGTCTTAATTACTCATTAAACCACAGTCAGAAGACATATAGGTGCTATTTGGGAAAACTTTATTACCTAGGATGGGGTTTCTCTAATTGCTAATCACAACCCCACTGGGTCATGTTTGACATTTTATAATGAAAGTAAAATAGAAAGTGCCATAGTATGTTACAGAAAGCAAAGATGAGTATTGTTTCTCAAAGCCTTTGCTTtatgtatttatatatatactcattcatatctatctatatatatatagatataGTGGTTCACAGTAATCATACAAAGTCTTTATTCTGTCCACTATTATAAACATTTCTATTAAAACTAAAACTGGGCtatatgtaaaaaccccaaagatacacacacaaaaaaaatctgttagaactcaagtgaattcagtaaagttgcaggatacaaaatcaacatacaaaaagcattagcatttttatacataaataatgatctaactgaaaaattaagatgccatttatgatagcataaaaaactacttaggaataaatttaacaccaaggcagtaaaagatctgtacactgaaaactatgaaacactgatgaaagaaagacacaaataaatggaaagatatcccgtgctcatggatcagaataatactgttaaaatggtcacactacccaaagcaattgagaatcaatgcaatcctatcaaaattccaatggcattatttacacaaatagaaaaaaaatcctcaaattcatatgtaaccataaaagaccctgaataggcaaaagaatactgaggaaaaaatgttggagacatcacatttcctaattataaattatatcacaaaactatagtaatcaagacagtatggtactggcataaaaacacatacacagaccagtgggacagaagaaagagtccagaaataaattcaaacatatacagtcaactaatttttgacaaagacaccaagaagacacattggcgaaagaacagtcttcattaagtgatgctgggaaaactgcatttccacatgcaaaacaatgaaatcagacccttatcttagacctacacaacaatcaattcaaaatggataaaagacctaaatgtaagaccagaaactataaaactagaagagaacatagaagaaaagttcctggacactgacccttggcaatgattttttggatatcacaccaaaagctcagtcaacaaaagcaaaaacaaatgtgactacatcaaaccaaaaagcttctgacagtaaaagaaacagtcaacaaaatgaaacaatagcctacagattgagtaaaaaatatttgtaaggcatatatctgaaaaagggttagtatccaaaatttataaagaattcatataactcaattttaaaaatgggcaaaagacctgaatagacatttctccaaagaagacacacagatggccaacaggtatataaaagggtgctcaacataattaatcatcaaggaaatgcatataaaaaccactctcaagtactacctctcaccagttaggctagctattatc

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