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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TOMM5P4
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr6:3513294-3513597  UCSC
Strand -
Parental Sequence NM_001134825.1
Parental seq. overlap 255 bp
Parental seq. overlap (%) 36.5%
Genomic Region Intergenic
Retrocopy Summary TOMM5P4, located on chr6:3513294-3513597, is a retrocopy of the parental gene TOMM5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TOMM5
Full Name N/A
Also known as C9orf105
Coordinate chr9:2779288-2783461
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TOMM5P4
Chimpanzee Pan troglodytes TOMM5P3
Bonobo Pan paniscus TOMM5P4
Gorilla Gorilla gorilla TOMM5P3
Gibbon Nomascus leucogenys TOMM5P2
Crab-eating macaque Macaca fascicularis TOMM5P1
Rhesus Macaca mulatta TOMM5P1
Baboon Papio anubis TOMM5P3
Golden snub-nosed monkey Rhinopithecus roxellana TOMM5P4
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TOMM5P4
ATGTTCCAGATCCAGGGCCTTGCACAGAAGCTGGATATGGAGGAGATGAAATGGAAGGTGTGTGAGGATGTGATCTCCTCCATATGGAACTTCCTCATCTATGTGGCCCTGCTGCAAATCATTCCTTTTATCTTAAAGAAATTGCACAGCATATGAAGATTGAGTATCGCATGTGAATGTATAATATGCAGAACCTGGTTACAGTTTCTACAACTCTCTGCAAGCAAATAGGCCCAGAAAACTGTAAGAGACTCTGTAATGGTTGGGTATAAAAATTCTGCTTGTTAAGAACAAGTTTGGCTCA
>NM_001134825.1
TGGAGAGCGGAGCGCGGCGGCTGGAAGCAGCTAAGACAGACCCGCGATGTTCCGGATTGAGGGCCTCGCGCCGAAGCTGGACCCGGAGGAGATGAAACGGAAGATGCGCGAGGATGTGATCTCCTCCATACGGAACTTTCTCATCTACGTGGCCCTGCTGCGAGTCACTCCATTTATCTTAAAGAAATTGGACAGCATATGAAGACAGGACATCACATATGAATGCATGATATGAAGAGCCTGGTTACAGTTTCGATCCCTCTCTGCAAGTGAATAGGCCCAGAAAGGTGTAAGAGACTCTTTGAATGGACATAAAATTCTGCTTGTTAAGAACAAGTTTGGCTCTGGTAACTGACCTTCAAAGCTAAAATATAAAACTATTTGGGAAGTATGAAACGATGTCTCGTGATCTGGTGTACCCTTATCCCTGTGACGTTTGGCCTCTGACAATACTGGTATAATTGTAAATAATGTCAAACTCCGTTTTCTAGCAAGTATTAAGGGAGCTGTGTCTGAAATGGCACTGTCTTGTCAGTCATTTCTGTTTACTTTTTTCTTCTGCCCAGAGTGTATTTGTGAAGAGTCTCTTATAATTTGTTATGTTTTGTGGAAATCAGCACACAGTCACAATGACATTTAAGCACAGGATCATTATTAGTCTATGTTTTTAATAAACATATCAATTAAGAAAAA

Publications

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