Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TPT1P4
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Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Pongo abelii
Coordinates chr4:81531497-81532231  UCSC
Strand +
Parental Sequence XM_002824239.3
Parental seq. overlap 646 bp
Parental seq. overlap (%) 48.3%
Genomic Region Intergenic
Retrocopy Summary TPT1P4, located on chr4:81531497-81532231, is a retrocopy of the parental gene TPT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TPT1
Full Name N/A
Also known as -
Coordinate chr13:28121368-28125844
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla TPT1P5
Gibbon Nomascus leucogenys TPT1P5
Green monkey Chlorocebus sabaeus TPT1P3
Crab-eating macaque Macaca fascicularis TPT1P8
Rhesus Macaca mulatta TPT1P8
Baboon Papio anubis TPT1P3
Golden snub-nosed monkey Rhinopithecus roxellana TPT1P2
Marmoset Callithrix jacchus TPT1P3
Rabbit Oryctolagus cuniculus TPT1P23
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TPT1P4
GGTCTCCCTTTAGCCGCTCTCATGATTATCTACCCTGGCGTCATCAGCCACAATAGTTCTCCAACATGTATAAGATTTGGGAGATTGCAGACAAGCTTGCCTGGAGGTGGAGGGAAAGATGGTAAGTAGGACGCAGGGTAACACCGATGACTTGTTCATTGGTGGAAATGCCTCTGCTGAAGGCCCCTAGGGCAAAGGTACCTAAAGCACAGTAATCACTGGTGTTGATATTGTCAGGAACCTCACTTACAGGGAGCCAGCTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGATTACATGAAATCAATCAAAGGCAAATTTGGAGAATAGAGACCAGAAAGAGTAAAATGTTCTGTGACAGAGGCTACAGAACCAATCAAGCACACTCTTGCTAATTTCAAAAACTCCAATTCTTTATTGGTGAAAACATGAATCCAGATGGCATGGTTGCCCTGCTGAACTACCATGAGAATGGTATGACTCCATATATAATTTTCTTTAAGGATGATTTAGAAATGGAAAAAACGGTAACAAAGTTGGCAATTACTTTGGATCTATCACCTGTCGTCATAACTGGCTGCTGCTTGTCACCCATACAACACCAGTAATTAAGACGGATGGGACTGATATAATCTGGAGCTCTTCATTTATTTTGACTATGATTTATTTGAAGTGAAGGCAGTTTTTAAGAAAACTATGTCAGGTTGTCTAAAAATAAAATGTATTTAAACT
>XM_002824239.3
GGAACGGAGCCTTGTGTGTCCGCGTCAAGTCCCCGGATGCTCACCTCCCCGACTCGCCCCCGCTGTGGCCCCGCCCCCGCGCGGCTCTTCGTGCCACGTCACCGCCTGCGTCGCTTCCGGAGGCGCAGCGGACGATGACGTAGAGGGACGTGCCCTCTATATGAGGTTGGGGAGCGGCTGAGTCGGCCTTTTCCGCCCGCTCCCCCCTCCCCCCGAGCGCCGCTCCGGCTGCACCGCGCTCGCTCCGAGTTTCAGGCTCGTGCTAAAGCTAGCGCCGCCGTCGTCTCCCTTCAGTCGCCATCATGATTATCTACCGGGACCTCATCAGCCACGATGAGATGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGTTGTGCCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAAGGTAACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAGGCCCCGAGGGCGAAGGTACCGAAAGCACAGTAATCACTGGTGTCGATATTGTCATGAACCATCACCTGCAGGAAACAAGTTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGATTACATGAAATCAATCAAAGGGAAACTTGAAGAACAGAGACCAGAAAGAGTAAAACCTTTTATGACAGGGGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACTACCAGTTCTTTATTGGTGAAAACATGAATCCAGATGGCATGGTTGCTCTATTGGACTACCGTGAGGATGGTGTGACCCCATATATGATTTTCTTTAAGGATGGTTTAGAAATGGAAAAATGTTAACAAATTTGGCAATTATTTTGGATCTATCACCTGTCATCATAACTGGCTTCTGCTTGTCATCCACACAACACCAGGACTTAAGACAAATGGGACTGATGTCATCTTGAGCTCTTCATTTATTTTGACCGTGATTTATTTGGAGTGGAGGCATTGTTTTTAAGAAAAACATGTCATGTAGGTTGTCTAAAAATAAAATGCATTTAAACTCATTTGAGAGAATGCCTTTTAGTTTAATGCATATTTAAACTAAATTCATCCTGTAGTGTTCCTGGAGAAGCTAGAGCCTGGTTGTAGGCTACTACTCATCAATTAACTTCTACAGTGGAGACTACTTCTGGGACTGGAATATAAAAAAGAATCAGAGGTTTTGATTTTGAGTTGCAATAAAGGGAAAGACCATGCTCATAGCAGTGCCGACATCTGAAGTGTGGAGCCTTACCCATTTCATCACCTACAACGGAAGTAGTTAACTGGAAGAGATTACCAAGAGAATAAAAAGAGACTCATTCAGTGGAA

Publications

PMID - Link Title
No publications available for this retrocopy