Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RAP2CP1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Sarcophilus harrisii
Coordinates chr3:12098090-12098350  UCSC
Strand +
Parental Sequence XM_003774791.4
Parental seq. overlap 217 bp
Parental seq. overlap (%) 7.5%
Genomic Region Intergenic
Retrocopy Summary RAP2CP1, located on chr3:12098090-12098350, is a retrocopy of the parental gene RAP2C. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RAP2C
Full Name N/A
Also known as -
Coordinate chrX:35942726-35960390
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Marmoset Callithrix jacchus RAP2AP4
Sheep Ovis aries RAP2AP1
Panda Ailuropoda melanoleuca RAP2AP1
Cat Felis catus RAP2AP1
Pale spear-nosed bat Phyllostomus discolor RAP2CP1
Velvety free-tailed bat Molossus molossus RAP2AP2
Greater mouse-eared bat Myotis myotis RAP2AP1
Egyptian rousette Rousettus aegyptiacus RAP2AP1
Opossum Monodelphis domestica RAP2CP2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RAP2CP1
AGTGGGCAAGTCGGCCCTCACCGTGCAGTTCGTGACGGGCTCCTTCATCGAGAAGTACGACCCCACCATCGAGGACTTCTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCCGTGCTGGAGATCCTGGACACTGCCGGTACCGAGCAGTTCGCGTCCATGCGGGACCTGTACATCAAGAACGGCCAGGGCTTCATCCTCGTCTACAGCCTGGTCAACCAGCAGAGCTTCCAGGACATCAAGCCCATGCGCGACCAGAT
>XM_003774791.4
tcctcctcctcctcctcctcctcctcctcgtttAGTCTGCCTGCTCCTGCCCTGCCTCTCGCTCTCTTTCCCCCTGCTGGGCTGCCGCCGCCTGTCTTGAACTTCCTCATCTTCCCCCTGCTAGGCTAGGCCCTCTGCCTCTCAAACCCCAACTTGAGTTGGCAGATTTCCGCCCACCGCCCCCACGGCCTCCATAGCTGGTGGAGCCCCTTTTTATGCTGCTGAGAGGGAGCTGGTGAAGGCGAGACTGATGAGGGAATACAAGGTGGTGGTGTTAGGGAGCGGAGGGGTGGGTAAGTCTGCCCTGACTGTGCAGTTTGTCACGGGCACCTTCATTGAGAAATATGACCCCACCATTGAGGATTTTTACCGCAAGGAGATCGAAGTGGACTCTTCTCCCTCTGTACTGGAAATCCTGGACACCGCAGGGACTGAGCAGTTTGCTTCCATGAGAGATCTCTACATCAAAAACGGCCAAGGTTTCATCCTAGTTTATAGCCTGGTTAACCAGCAGTCTTTCCAGGATATCAAGCCCATGAGGGACCAGATTGTCAGGgtgaagagatatgaaaaagtcCCACTCATCCTAGTGGGGAATAAagtggatctggaatcagaaagggaGGTTTTGACTGCAGAAGGCAGAGCTTTGGCTCAGGAGTGGGGCTGCCCGTTCATGGAGACATCAGCCAAAAGTAAAACAATGGTGGACGAACTCTTTGCAGAAATCGTCAGGCAAATGAACTATGCATCTCTGCCTGAGAAACAAGATCAGTGTTGTACAACTTGCATCATCCAGTGAAGAAGCTAACCTCATTCATGGCCATACAGAGCAGATAAAACTCAGAGGGAATTTGCACAGATGCTGCTTTGGACAACTTGACAGCCTGGGTTGCAGAACTGAGCCTTGGTAAACCTGTCTCGATAACAGCATGTTGCCATACACCTAATTAAGTGCATAAGGTCCACAGCCTTCAAGATCCATAGACCTTAACCAAGAATGCTTAGCACGTTTACCATAAGTTAAAATAGATTCTTTATCAATCAGTCCTTTTGTAGCTTTCTAAGTTCTTATTAATGGTTAATATGCAAGggttcatttttaatattttaattgatttctttaatcaatttctgaacttgtatttattaaatacttaaactCAGTATTACCTACTCAAtgccttttaaaagttttaatggAGAATAAATTGAGCCTTAAACAAGTGGTTACTTCTGTATATTACCTCGCTCCAGTGCTTCAATCTATTTGCGAAAATATTTGTTTCCTGAAATGGTTGGTTGATATTTTGAGACTTTATGTTTACGTGTGACAGTGTTGTGAGAAACTCAAGATCCCATCTTACCTGTATGGATGTAATATCCCTTTTCTCATCGGATGCAGCCTGTGATAGGGTATTGTAATTGACATGTTCAGAAAGTGGAAATTGCGATTTGAAATTGACCGTGATATTTAGTTGAATGGGGTTTTCATGATTTTGTTAATGTCCTTTGCAACAGTGACTTGCAGCTGAAGCATTTTCCTTTCTGCGAAGTTCTAAATTTAGTTATGACCTACTTTTAACAATGCCTTTGAAAAGGGATATTGTATTCTAGGTAAATGAATTTCGGATACCTGCACTCAAATATCTCAGCTTTGCCTGGCAGGTTAGTAATTTACATCTAGTCAGTTTCTGCACATGTAAAGTGaatgcaaataaaatgattttacattttatagttAATATTTGTCTTTCTGAACAATGTTGTAAAGCAATATTTGTTAACATCTTCTTGCACTGTCACAattgctttttttgttatttcccaGTAAACAGGTTAGCAACAGAGACAAAAATCAGTGTAAGGTAAGGGGGGAAAGCACCCATTTTTTCCAGTGCTCTGAATTGCAAATGCGCTCTGAACAGCCATTGACTTCCCTGTTGTTTACCTGATCAACACATTTTGTCTGAATACTTGAACATTTTAACAGTAACACAggtattaaaacagaaaaaaaaatgtgtaaagaaTAAATGATGCTTTTTCTTCCGTTTTAACATGTGTACAAGCGAGCTTTTTCTAGCAGTGGTTTAAAGTTTTGTAagttttccaatattttgctttaTCTTCGGTTTAGTtttgtgtgtgcctgtgtgtgtgggCGTGTGCGCGTATGTTTTACAGAAGTGATGAACTGCAGCTCACCTACTGCACCAAAGTTGTAGATCTTAGGGGCCCAGCTTTAGTCATTTGAACATGcttctaatgaaaagaaaaccaaaaggacTCTTTTGACTTGTAATAGCTAAAGACCTTTGGCCAAGAAGGCTCTAGTATATGCAGTGATGGTCTGGGGAGGTGGGGCAATTTAGCATTTCATTGTGTGCGATATTCAAGTACATCAGCAGGTATCACCAGGGCCTACTACATTGCCATCAGTGGTCTTTGTGACCGATTTTTCTGGAACAAAAATTCTGATTGAACTGTTTGATTCTCCATGGTTGGTGGACTTTATTTAGTTCCCCATGAAATTCTCTAAAGTTAAATTTTCTCGTCttagatatataattttatggTGAGAACGGAGGGCTAGGGATGATTGGAATACTTTTCCCTATTTATAAACTGCTTGAAACCTGATCATTTCGGTTTGCACTTTAATATCACACTTAAAACCAAACACTGTATTCAAAGTAGATTAGATGGTGGTGGTCAATCTTTATTAGCTCTACTAAACAATAGGAGATTCAAATAATTCATGAAGATTTTAGTTTTCTGAAAATTGTGGGTTCTTTCTTCTGGGTagttttctttccccccttcttccttcccccctccttcttcctcctccttctctctttcgcTCTTGCTCTCGTT

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