Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTG1P11
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr4:72092613-72093411  UCSC
Strand +
Parental Sequence NM_001284724.1
Parental seq. overlap 667 bp
Parental seq. overlap (%) 34.8%
Genomic Region Intragenic (GRIK2)
Retrocopy Summary ACTG1P11, located on chr4:72092613-72093411, is a retrocopy of the parental gene ACTG1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTG1
Full Name N/A
Also known as -
Coordinate chr16:79129433-79132250
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTG1P18
Chimpanzee Pan troglodytes ACTG1P13
Bonobo Pan paniscus ACTG1P24
Gorilla Gorilla gorilla ACTG1P11
Orangutan Pongo abelii ACTG1P14
Gibbon Nomascus leucogenys ACTG1P2
Green monkey Chlorocebus sabaeus LOC103215020P1
Rhesus Macaca mulatta ACTG1P11
Baboon Papio anubis ACTG1P12
Golden snub-nosed monkey Rhinopithecus roxellana ACTBP8
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTG1P11
TACGACATGGAGAAGATCTGGCATCACACCCTCTGCAATGAGCTGCAGTGGTTCCTGAGGAGCACCCGGTGCTGCTGCCTGAGGCTCCTCTGAACCCTGAGGCCAACAGAGAGAAGTTGACTCAGATCATGTTTGAGACCTTTGATACCCCTGCCATGTACGTGGCCCCCAGGGCCATGCTGTCCCTGTACACCTCCGGTAGTACCTCTGGTATTGTCATGGACTCTGGAGATGGGGTTACTTACACAGTGCCGTCTTTCAGGGCTATACCTTTCCCTAGGTCATCCTGCACCTGGACCTCATGAAGATCCTCACGGAGCGTGGCTACAGCTTCACCACCACTGCCTAGCGGGAGACAGTGCACAACATCAAGGAGAAGCTGCACTATGCTGCCCTGGACTTTGAGCAGGCGATGGCCACCATGACATCCTCTTCCTCCCTGGAAAGGAGCTAGGAGCCGCTTTACGGCTAGGTCATAACCATTGGCAATGAGAGGTTCTGGTGTCCAGAGGCGCTGTTCCTTTTTCCTGAGCATGGAATCTTGCAGCATCCTTGGGACCACCTTCAACTCTGTCATAAAGTGTGGCGTGCACATTCACAAGGACCTGTATGCTGACACAGTGCTATCTGGAGGCACAACCACATACCTGGGCATCACTGACAGGATACCGAAGGAGATCACTGCCCGGGCACCCAGCACCACGAAGATCAAGATCATCATTCCCACTGAGCGCAAGTACTTGGTGTGGATCAGCAGGTCCATGCTGGCCTCCCTTTCCACCTTCCAGCAGATGTGGAT
>NM_001284724.1
AGTCGCCGCCGCCAGCTCGCGCACCTTGTTCTTCTGCTGCTCAACTGTCCTAGTCCTCCGCCGGTCGCAATGGAAGAAGAGATCGCCGCGCTCGTCATTGACAATGGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGACGATGCACCCCGAGCCGTGTTTCCCTCCATCGTCGGGCGCCCCCGACACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCCTACGTGGGTGACGAGGCCCAGAGCAAGCGCGGCATCTTGACCCTGAAGTACCCTATTGAGCATGGCATTGTCACCAACTGGGACGACATGGAGAAAATCTGGCACCATACTTTCTACAATGAGCTGCGCGTGGCCCCAGAGGAGCACCCGGTGCTGCTGACCGAGGCCCCTCTGAACCCTAAGGCCAACAGAGAGAAGATGACTCAGATTATGTTTGAGACCTTCAACACCCCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCTGGCCGCACCACTGGCATTGTCATGGACTCTGGCGACGGGGTCACCCACACGGTGCCCATCTACGAGGGCTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATTGTGCGCGACATCAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCCGCATCGTCCTCTTCCCTGGAGAAGAGCTACGAGCTGCCTGATGGCCAGGTCATCACCATCGGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCGTCTTTCCTGGGCATGGAATCTTGTGGCATCCATGAGACCACCTTCAACTCCATCATGAAGTGTGATGTGGACATCCGCAAAGACCTGTATGCCAACACGGTGCTGTCTGGTGGCACCACCATGTACCCAGGCATTGCCGACAGGATGCAGAAGGAGATCACCGCCCTGGCACCCAGCACCATGAAGATCAAGATCATCGCACCCCCAGAGCGCAAGTACTCAGTGTGGATCGGTGGCTCCATCTTGGCCTCACTGTCCACCTTCCAGCAGATGTGGATTAGCAAGCAGGAGTACGACGAGTCGGGCCCCTCCATCGTCCATCGCAAATGCTTCTAAATGGACTGAGCAGATGCGTAGCATTTGCTGCATGGGTTAATTCAGAAGTATAAATTTGCCCTTGGCAAATGCATACACCTCATGCTAGCCTCACGAAACTGGAATAAGCCTTTGAAAAGAAATTGTCCTTGAAGCTTGTATCTGATATCAGCACTGGATTGTAGAACTTGTTGCTGATTTTGACCGTGTATTCAAGTTAACTGTTCCCCTTGGTGTTTGTTTAATACCCTGTACATATCTTTGAGTTCAACCTTTAGTACATGTGGCTTGGTCGTTTCGTGGCTGAGGTCAGAACGTGCTTGTGGAAGACAAGTCTGGCTTGGTGAGTCTGCGTGGCCAGCAGTCTCCGATCTGTGCAGGGTATTCATGTGTCAGGGCTTGAGTGTTCTGGGATTTCTCTAGAGGCTGGCAAGGGCTCCTGAACCAGTTTCTGCCCTGCCAGTCTGTCAGGGTTGGAAAGTCCAAGCCATAGGACCCAGTTTTCTTAGCTGACGTTTTCTGCCAGAACACCGTGGGCTGTTACTTGCCTTGAGTTGGAAGCGGTTTGCATTTACACCTGTAAATGTATTCATCCTTTTAATTTATGTAAGGTTTTTTTGTACGCAATTCTCAATTCTTTAAAGAGATGACAACAAATTTTGGTTTTCTACTGTTATGTGAGAACATTAGGCCCCAGCAACACGTCATTGTGTAAGGAAAAATAAAAGTGCTGCCGTAA

Publications

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