Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name ACTG2P1
Wait
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr16:79130386-79131090  UCSC
Strand -
Parental Sequence XM_005575577.2
Parental seq. overlap 526 bp
Parental seq. overlap (%) 36.3%
Genomic Region Intragenic (ACTG1)
Retrocopy Summary ACTG2P1, located on chr16:79130386-79131090, is a retrocopy of the parental gene ACTG2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTG2
Full Name N/A
Also known as -
Coordinate chr13:36021488-36048635
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTC1P2
Bonobo Pan paniscus ACTG2P6
Gorilla Gorilla gorilla ACTC1P1
Orangutan Pongo abelii LOC100442237P1
Gibbon Nomascus leucogenys ACTC1P1
Green monkey Chlorocebus sabaeus ACTC1P1
Rhesus Macaca mulatta ACTC1P1
Baboon Papio anubis ACTC1P1
Golden snub-nosed monkey Rhinopithecus roxellana ACTC1P1
Marmoset Callithrix jacchus ACTC1P1
Mouse lemur Microcebus murinus ACTC1P1
Cow Bos taurus ACTC1P1
Sheep Ovis aries ACTA1P1
Dolphin Tursiops truncatus ACTC1P1
Horse Equus caballus ACTC1P1
Cat Felis catus ACTC1P1
Egyptian rousette Rousettus aegyptiacus ACTA1P1
Sloth Choloepus didactylus ACTA2P1
Chimpanzee Pan troglodytes Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTG2P1
CAGATTATGTTTGAGACCTTCAACACCCCGGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCTGGCCGCACCACTGGCATTGTCATGGACTCTGGCGACGGGGTCACCCACACGGTGCCCATCTACGAGGGCTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGCGTGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATTGTGCGCGACATCAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCCGCATCGTCCTCTTCCCTGGAGAAGAGCTACGAGCTGCCTGATGGCCAGGTCATCACCATCGGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCGTCTTTCCTGGGTAGGTGTTGTGAGCTAAAGTTTTCTCCTCTTTTCATCCTGGGCAACTCAGCACCACTAAGGGAGGGCTTTGTTCTCTAGGCATGGAATCTTGTGGCATCCATGAGACCACCTTCAACTCCATCATGAAGTGTGATGTGGACATCCGCAAAGACCTGTATGCCAACACGGTGCTGTCTGGTGGCACCACCATGTACCCAGGCATTGCCGACAGGATGCAGAAGGAGATCACCGCCCTGGCACCCAGCACCATGAAGATCAAGG
>XM_005575577.2
AGCTGGCCTTTTTAGGGACTTTGTTTAAAGAAGATCCGCCTCTGGGGTTTTATATTGCTCTGGTATTCATGCCAAAGACACACCAGCCCTCAGTCACTGGGAGAAGAACCTCTCGTACCCTCGGTGCTCCAGTCCCCAGCTCACTCGGCCACTCACACCATGTGTGAAGAGGAGACCACCGCACTCGTGTGTGACAATGGCTCTGGCCTATGCAAGGCAGGCTTCGCAGGAGATGATGCCCCCCGGGCTGTCTTCCCCTCCATCGTGGGCCGCCCTCGACACCAGGGTGTGATGGTGGGAATGGGCCAGAAAGACAGCTATGTGGGGGATGAAGCTCAGAGCAAGCGAGGAATCCTGACTCTCAAATACCCCATTGAACACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCACCACTCCTTCTACAATGAGCTGCGTGTAGCACCTGAAGAGCACCCCACCCTGCTCACAGAGGCTCCCCTAAATCCCAAGGCCAACAGGGAGAAGATGACCCAGATCATGTTTGAAACCTTCAATGTCCCTGCCATGTACGTCGCCATTCAAGCTGTGCTCTCCCTCTATGCCTCTGGCCGCACGACAGGCATTGTCCTGGATTCAGGTGATGGTGTCACCCACAACGTCCCCATCTATGAAGGCTATGCCCTGCCCCATGCCATCATGCGCCTGGACCTGGCTGGCCGTGACCTCACTGACTACCTCATGAAGATCCTCACAGAGAGAGGCTATTCCTTTGTGACCACAGCTGAGAGAGAAATTGTGCGAGACATCAAGGAGAAGCTGTGCTATGTGGCCCTGGATTTTGAGAATGAGATGGCCACAGCAGCTTCCTCTTCCTCTCTGGAGAAGAGCTATGAGCTGCCAGATGGGCAAGTTATCACCATCGGCAATGAGCGCTTCCGCTGCCCTGAGACCCTCTTCCAGCCTTCCTTTATCGGCATGGAGTCCGCTGGAATTCATGAGACAACCTACAATTCCATCATGAAGTGTGACATTGACATCCGTAAGGACTTATATGCCAACAATGTCCTCTCTGGGGGCACCACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACAGCCCTGGCCCCCAGCACCATGAAGATCAAGATTATTGCTCCCCCAGAGCGGAAGTACTCAGTCTGGATTGGGGGCTCTATCCTGGCCTCTCTCTCCACCTTCCAGCAGATGTGGATCAGCAAGCCTGAGTATGATGAGGCAGGACCCTCCATTGTCCACAGGAAGTGCTTCTAAAGTCAGAACAGGTTCTCCAAGGATCCCCTCGAGACTACTCTGTCACCAGTAATGAAACATTAAAACCTACAAGCCTTA

Publications

PMID - Link Title
No publications available for this retrocopy