Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTL6AP1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr7:113873823-113874028  UCSC
Strand +
Parental Sequence XM_015445555.1
Parental seq. overlap 179 bp
Parental seq. overlap (%) 8.4%
Genomic Region Intragenic (POLE2)
Retrocopy Summary ACTL6AP1, located on chr7:113873823-113874028, is a retrocopy of the parental gene ACTL6A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTL6A
Full Name N/A
Also known as BAF53A
Coordinate chr2:84068137-84093561
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTL6AP1
Chimpanzee Pan troglodytes ACTL6AP1
Bonobo Pan paniscus ACTL6AP1
Gorilla Gorilla gorilla ACTL6AP1
Orangutan Pongo abelii ACTL6AP1
Gibbon Nomascus leucogenys ACTL6AP1
Green monkey Chlorocebus sabaeus ACTL6AP1
Rhesus Macaca mulatta ACTL6AP1
Baboon Papio anubis ACTL6AP1
Marmoset Callithrix jacchus ACTL6AP1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTL6AP1
CCTATGGCAGTGTGGCAGTGGCAGGAGGAAACATGCTGATACAGTTTTACTGACAGGTTGAATAGAGAGGTCTCTCAGAAAACTCCCCCAGGTATACGGCTGAAATGGACTGCAAATTATAAAACAGTGGAACAGAGGTTTAGTTCATGTATTGGTGGTCCCATTCTAGCTTCTTTGGGCATGTTTCAACAGATGTGAATTTCCAA
>XM_015445555.1
GAGTGCGGCCGGAGGAGAGAGCGCGCGTTTTCGGCGTGTGGGGTTTGTAACCGCCGCTCCCAGCCCTCCCCTCCTCGGCGTTCCCTTCCGGTTTCCCCCTCTCGGGACCCCGGCCTCCCCGCCCCATCCCCGCCCCACGCTCTGCCCGCCCCCGGAGCCCACCAGGCTCGGCCAGCGCCTCGGGCGCCCTGGAGTGGCGGCTCTCTGTGGCCGGTTCCTGCCTCTGCCCCCGGAGAAGCAGGGTTTTGGGATGCACGCTCGTTTCTCTAGAGAGCCTCGGGGCTGGGCGGGAAGCTCAGTCCAGCCGGCCGCCGGCCCCGGCTTGCGTTACCGCCCCAGGGTCGCATCTCCACGAGTGCCTCCTGGACTCGGCTGTGTCGGGGCGCATGTGCTCGCGCCTAAACTTGGAAGGTCCCGGCGGTTTGCAAGCGTGGACGGAGGGTTCCCAGAGCGTCTCACAGATGAAGTTGGAGCCCTTGTTTTTGACATTGGATCCTATACTGTGAGAGCTGGTTATGCTGGTGAGGACTGCCCCAAGGTGGATTTTCCTACAGCTATTGGTATGGTGGTAGAAAGAGATGACGGAAGCACATTAATGGAAATAGATGGCGATAAAGGCAAACAAGGCGGTCCCACCTACTACATAGATACTAATGCTCTGCGTGTTCCAAGGGAGAATATGGAGGCCATTTCACCTCTAAAAAATGGGATGGTTGAAGACTGGGATAGTTTCCAGGCTATTTTGGATCATACCTACAAAATGCATGTCAAATCAGAAGCCAGCCTCCATCCTGTTCTCATGTCAGAGGCACCGTGGAATACTAGAGCAAAGAGAGAGAAACTGACAGAGTTAATGTTTGAACACTACAACATCCCTGCATTCTTCCTTTGCAAAACTGCAGTTTTGACGGCATTTGCTAATGGTCGTTCTACTGGGCTGATTTTGGACAGTGGAGCCACTCATACCACTGCAATTCCAGTCCACGATGGCTATGTCCTTCAACAAGGCATTGTGAAATCCCCTCTTGCTGGAGACTTTATTACTATGCAATGCAGAGAACTCTTCCAAGAAATGAATATTGAATTGGTTCCTCCATATATGATTGCATCAAAAGAAGCTGTTCGTGAAGGATCTCCAGCAAACTGGAAAAGAAAAGAGAAGTTGCCTCAGGTTACAAGGTCTTGGCACAATTATATGTGTAATTGTGTTATCCAGGATTTTCAAGCTTCGGTACTTCAAGTGTCGGATTCAACTTATGATGAACAAGTGGCTGCACAGATGCCAACTGTTCATTATGAGTTCCCCAATGGCTACAATTGTGATTTTGGTGCAGAGCGGCTAAAAATTCCAGAAGGATTATTTGACCCTTCCAATGTAAAGGGGTTATCAGGAAACACAATGTTAGGAGTCAGTCATGTTGTCACCACAAGTGTTGGGATGTGTGATATTGATATCAGACCAGGTCTCTATGGCAGTGTAATAGTGGCAGGAGGAAACACACTAATACAGAGTTTTACTGACAGGTTGAATAGAGAGCTGTCTCAGAAAACTCCTCCAAGTATGCGGCTGAAATTGATTGCAAATAATACAACAGTGGAACGGAGGTTTAGCTCATGGATTGGCGGCTCCATTCTAGCCTCTTTGGGTACTTTTCAACAGATGTGGATTTCCAAGCAAGAATATGAAGAAGGAGGGAAGCAGTGTGTAGAAAGAAAATGCCCTTGAGAAAGAGTTCCCAAGCTTCTACCTTCCTTTGTCACCTTACGTTTCATAGCTTTAGTATACTCAGGAAAAGAATGACCATCTTTTGTAGAATGTTTATACATTTTTGCATATTTCAATTTCCACTTAAATTTTTTAAAGCTTTAACTGGCTCTATAAATTAAGATAAGTTTGTGCTTTCCTTGAAATGCACTTATTCTTATTACAAGCATTTTTATAATTTTGTATAAATGTCTATTTTCTCTAAATATTTTGCTTTCAGTAAAATGCTTTCCAACTCTGTTTAGTATATTAATTACCAGTGGATTGGTAGAATTGCTTTTTATTGACTAGTAAAAGTTACTGCCTATGCTTTTTACCTTAGGCTTATAGAATTAAATAAAAATTAGCCATTCCAGAAATAAA

Publications

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