Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name AHSA2P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr1:180760216-180761260  UCSC
Strand -
Parental Sequence XM_005575789.2
Parental seq. overlap 866 bp
Parental seq. overlap (%) 56.9%
Genomic Region Intergenic
Retrocopy Summary AHSA2P1, located on chr1:180760216-180761260, is a retrocopy of the parental gene LOC102144311. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC102144311
Full Name N/A
Also known as AHSA2|AHSA2P
Coordinate chr13:48914989-48924590
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus AHSA2PP1
Gorilla Gorilla gorilla AHSA2PP1
Orangutan Pongo abelii AHSA2PP1
Green monkey Chlorocebus sabaeus AHSA2P1
Rhesus Macaca mulatta AHSA2PP1
Baboon Papio anubis AHSA2PP1
Golden snub-nosed monkey Rhinopithecus roxellana AHSA2PP1
Marmoset Callithrix jacchus AHSA2PP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>AHSA2P1
ACCCACGCTGGATAGTGGAGGAGTGGGAGGACGGGACTAATGTGAACAGCTGGCACTGAGTCGGATGCCACCAGCTGGTCCAAAGAGAAGCTCCAGGAGTTCCCGGCGGTCATCGTCATGGAGGATGAGGCTGGCCGCTAAGAGATCAGCAAGCTGAAGCAGGCAGAAAGTAAGGCTTCTTGCAGCATCTGCAAAGGAAAGCTGATTTTCTTGTATGAGTGGAACATCAAACTGGCCTGGAAAGGTATCATTAAAGAATCTGATGCAAAGCACAAGGCATTGATTAAAATACCCAATCTTTCTGAAGAAAATGAAGTAGATGACACTGAGGTGAACATGAGTAAAAAGAAAGGAGATGGGGATATACTGAATGATCTTATGAAAACTGCAGGCACTGCCAAGGTCAGGGAGGAGGTCCTTGGAGATTACCTGAAGGCATTCAAGACAGAATTTACAATGGGAATGGTTTTACCAATGAAAACTATGGCAACCTAGGAATTGATTTTTAAAAGAAAATGGGGTGAGACTATCTTGCAGGTTCAGGCCTCATCTCCAGTGCCACTGGGTATAAGAATTCCCACTATGGCTCGTCCCATGAGGGAACAGTTCGACACAACTGTAGAACAGCTGTACAGCATCTTCACTGTGAAGGATTTGGCGCAAAAATTTTCCAAATCTCCTGCTGTATTAGAAGCTGAAAAGGGAGGGAAATTCCAAATGTTTGATGGGAACATCACTGATGAATATATAGAATTGTTAAGAAAAGGGAGGGAAATTCCAAATGTTTGATGGGAACATCACTGATGAATATATAGAATTGTTAACAGATAAAAAAGTCATAATAAAATGGAGATGTAGGAACTGGCCAGAAGGGCACATAAAATTACAATTGGACTGTAAAGGAGTTCCTATCTCTAAAAAAGAGAACATGAAATTCTGTTAGCAGAAGCAGCATTTTGAAGAAATAAAAGGTTTACTGTGCTGACCACCCTAAATGGTTGAATTAGTTAAATTTTTATAAGGCATTACTTTTTCTAAGCAGAAA
>XM_005575789.2
GCGCTGCGAACGCGCCGCTCCAGGGCTCGGCGGCCGGAAACGCCGGCTTCGGAGCCGCAGCGCCTTGGCCTTTCCGTGTTTTCCGTCCAGTCTGCGCCGCCATGGCCAAGTGGGGCCAGGGGGACCCGCGCTGGATCGTGGAGGAGCGGGAGGACGGGACCAACGTGAACAACTGGCATTGAGCGGGATGCCACCAGCTGGTCCAAAGGGAAGTTCCAGGAGCTCCTGGTGGGCATCGTTGTGGAGAATGACACTGGCCGCGGCGAGATCAGCGAGTTGAAGCAGATGGAAGGGGAGGCTTCGTGCAGTAGTCGCAAAGGAAAGCTGATTTTCTTCTATGAGTGGTACATCAAACTGGGCTGGAAAGGCATCGTTAAAGAATCTGGAGTGAAGCACAAGGGATTGATTGAAATACCCAATCTTTCTGAGGAAAATGAAGTAGATGACACTGAGGTGAACGTGAGTAAAAAGAAAGGAGATGGGGATATACTGAAGGATCTTATGAAAACTGCAGGCACCGCCAAGGTCAGGCAGGCCCTTGGAGATTACCTGAAGGCACTTAAGACGGAATTTACAATGGGAATGATTTTACCAGCGAAAGCTATGGCAACCCAGGAACTGACTGTCAAAAGAAAACCGAGTGAGAATACCCTGCAGGTTCAGGCCTCATCTCCAGTGGCACTGGGTGTAAGGATTCCCACTGTGGCTCTTCACATGATGGAACTGTTTGACACAACTGTAGAGCAGCTGTATAGCATCTTCACTGTGAAGGATTTGGTGCAAAAGTTTTCTAAATCTACTGCTGTATTAGAAGCTGAAAAGGGAGGGAAATTCCAGATGTTTGATGGGAACATCACTGGTGAATATCTAGAATTGTTAACAAATAAGAAGATCGTCATGAAATGGAGATGTAAGAACTGGCCAGAAGAACACTATGCCACGGTTGCACTGAATTTTGTGCCTACTCTAGGGCAAACGGAATTACAATTGGACTGTAAAGGAGTTCCTGTCTGTAAAGAAGAGAACATGAAATTCTGTTGGCAGAAGCAGCATTTTGAAGAAATAAAAGGTTTACTGCAGCTGACCCCTCTAAATGGTTGAATTAAAATTTTATAAGGCATTACTTTTTGTACGCAGAAGTGTCACATTGACCTCTTCGCTATATATATATATTTTTTAAAAAGGACCATCTTTATTTTATATTGGATGAAATCTGTGAACGTATATACAATTTAAAGCATTGACTCTTAACTAGACACTGCACTGAGTTAAAAGTAGCAAACAACCTGAAATTAGGCATTAACCTGACCTTCCATAGATACTCTAGAAATAGCTAAGTCCCGAGTGTAGCGAGTTGGTTTCCCAAACTGAAGCTTGTCCTACAGCAAGCTTGCTTGCAGCTGTACTTTTAGTTCAAGATGACAAAAAATAAATGGCAGGTTGACACT

Publications

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