Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name ATP5J2P13
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr16:61830645-61830926  UCSC
Strand +
Parental Sequence XM_005549143.2
Parental seq. overlap 250 bp
Parental seq. overlap (%) 47.5%
Genomic Region Intragenic (POLG2)
Retrocopy Summary ATP5J2P13, located on chr16:61830645-61830926, is a retrocopy of the parental gene ATP5MF. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATP5MF
Full Name N/A
Also known as ATP5J2
Coordinate chr3:43726215-43734755
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ATP5MFP4
Chimpanzee Pan troglodytes ATP5MFP7
Bonobo Pan paniscus ATP5MFP7
Gorilla Gorilla gorilla ATP5MFP1
Orangutan Pongo abelii ATP5MFP5
Gibbon Nomascus leucogenys ATP5MFP4
Green monkey Chlorocebus sabaeus ATP5J2P8
Rhesus Macaca mulatta ATP5MFP12
Baboon Papio anubis ATP5MFP9
Golden snub-nosed monkey Rhinopithecus roxellana ATP5MFP11
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATP5J2P13
GAAGATGGCGTCAGTTGTACCAGTGAAGGATGAGACACTTCTGGAGGTCAAACTAGGGGAGCTGCCAAGGTGGATCTTGATGTGGGACTTCAGCCCTAGTGGCACTGCTGGAGCGTTTCGAAGAAGTTACTACTGGTACTACAACAAGTACATCAACATGAAGAAGGGGAGCATCTCAGGGTTTACCACGGTGCTGGCAGCCTACATGCTCTTCATCTACTGCCTTTCCTACAATGAGCTCAAGCACGAGTGGCTACGCAAGTACCCTGAAGAAGACACACT
>XM_005549143.2
GGTGTGCGCAGTTGTGACCTGCTTCCCGTGAGCCTCTGCTCTACGGTCCCGGATAGAGCGTGCATTTGCTACCCCGCAACCCTCGCGCGGCCAGGCACAGCGGACACCAGGACTCCAAGATGGCGTCAGTCGTACCAGTGAAGGACAAGAAACTTCTGGAGGTCAAACTGGGGGAGCTGCCAAGCTGGATCTTGATGCGGGACTTCAGCCCTAGTGGCATTCTCGGAGCATTTCAAAGAGGTTACTACCGGTACTACAACAAGTACATTAACGTGAAGAAGGGGAGCATCTCGGGGGTTACCATGGTGCTGGCATGCTACGTGCTCTTCAACTACAGCATTTCCTACAAGCATCTCAAGCACGAGCGGCTCCGCAAATACCACTGAAGAGGACACACTGTGCACCACCCCCGACCCCATGACCTTGGCCTGAGCCCCTCCGTGAGGAACACAATCTCCATTGTTGCTGAATCCTTTCATGTCCTAATGGGAATTAACCTCCAAATAAAAGATGACTGGTACGTGT

Publications

PMID - Link Title