Retrocopy Name | betaTub56DP1 |
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Species | Drosophila melanogaster | |
Coordinates | chr3R:9408695-9410056 UCSC | |
Strand | - | |
Parental Sequence | NM_079071.3 | |
Parental seq. overlap | 1101 bp | |
Parental seq. overlap (%) | 66.4% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | betaTub56DP1, located on chr3R:9408695-9410056, is a retrocopy of the parental gene betaTub56D. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | betaTub56D |
Full Name | beta-Tubulin at 56D |
Also known as | 1t|A1ZBL0_DROME|B1t|BETA 56D|BetaTub56D|CG9277|DTB2|Dmbeta1|DmelCG9277|T|TBB1_DROME|TUB56D|Tub|Tub2D|Tub56D|Tubulin|beta|beta tubulin|beta-Tub|beta-Tub56D|beta-tub|beta-tub 56D|beta-tub56D|beta-tubuli |
Coordinate | chr2R:19447319-19451600 |
Strand | - |
Gene summary | A structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Located in microtubule. Is expressed in several structures, including chordotonal organ; embryonic epidermis; extended germ band embryo; gonad; and muscle attachment site. Human ortholog(s) of this gene implicated in Leber congenital amaurosis with early-onset deafness; complex cortical dysplasia with other brain malformations (multiple); congenital symmetric circumferential skin creases 1; hypomyelinating leukodystrophy 6; and torsion dystonia 4. Orthologous to several human genes including TUBB4B (tubulin beta 4B class IVb). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
>betaTub56DP1 |
CAAAATGCGTGAAATTGTACACATTCAGGCCGGTCAATGCGGTAACCAGATCGGTGGTAAATTCTGGGAGGTAATCTCGGATGAGCACTGTATAGATGCGACCGGAACGTACTACGGCGATAGTGATCTCCAGCTGGAGCGCATCAATGTATACTACAATGAAGCCACCGGTGCCAAGTATGTGCCACGCGCAATTCTCGTGGACCTGGAGCCCGGCACCATGGATTCGGTTCGTTCTGGCGCCTTTGGCCAGATCTTCCGGCCGGACAATTTTGTGTTTGGCCAATCGGGAGCAGGCAACAACTGGGCCAAGGGTCATTACACCGAGGGTGCTGAACTGGTGGATTCCGTCTTGGATGTGGTGCGAAAGGAGTCCGAGGGATGCGATTGCCTTCAGGTAAGTTTTGGGGGTTTGGGAATTTATCTGAAAAAGTTTACCCTACTTTTCTCCAACAGGGCTTCCAGCTGACCCACTCGCTGGGTGGCGGCACTGGCTCCGGCATGGGAACCCTGCTGATCTCGAAGATCCGCGAGGAGTACCCGGACCGCATCATGAACACCTTCTCGGTGGTGCCCTCGCCCAAGGTGTCCGATACGGTGGTGGAGCCCTACAATGCCACCCTGAGTGTGCATCAGCTGGTGGAGAACACCGATGAGACGTACTGCATCGACAACGAGGCGTTGTATGACATCTGCTTCCGCACACTGAAGCTGACCACGCCCACCTACGGTGACCTGAACCATCTGGTTTCGGCCACCATGTCTGGTGTGACGACCTGCCTGCGCTTCCCTGGCCAGCTGAACGCTGATCTTCGCAAGCTGGCCGTGAACATGGTACCCTTCCCCCGGCTGCACTTCTTCATGCCCGGATTCGCACCGCTCACCTCGCGAGGATCGCAACAATACCGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATGTTCGATGCCAAGAACATGATGGCTGCGTGCGATCCGCGACATGGTCGCTATCTGACCGTCGCCGCCATCTTCCGTGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTCAACATTCAGAACAAGAACAGCAGCTTCTTCGTGGAATGGATCCCGAATAACTGCAAGACAGCGGTGTGCGATATTCCGCCCAGAGGTCTCAAGATGTCGGCCACCTTCATTGGCAACTCCACCGCCATTCAGGAGCTATTCAAACGGGTTTCGGAGCAGTTCACCGCCATGTTCCGAAGGAAGGCCTTCTTGCATTGGTACACCGGCGAGGGAATGGACGAAATGGAATTCACAGAGGCCGAGAGCAACATGAACGACTTGGTTTCTGAATATCAGCAGTACCAGGAGGCGACTGCCGATGAGGAG |
>NM_079071.3 |
AATGCACTAATTTTTCCAAGTGTGTGAAGCGGACAGTTTGTGTTGTGTTCGACTGCTATAAGCGAAAGATAATTTTAAGTTAAAAGTTCAAAAGCCTAAAACAAATACAAAATGAGGGAAATCGTTCACATCCAAGCTGGTCAGTGCGGCAACCAAATCGGCGCCAAGTTCTGGGAGATCATCTCCGATGAGCATGGCATCGATGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGAGCGCATCAATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCCGCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCGGGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGCTGGTGGACTCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGACTGCCTGCAAGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTCCGGTATGGGAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACAGGATCATGAACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACCGTTGTGGAGCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAACACGGACGAGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCTTCCGCACCCTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTTGTCTCCCTGACCATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGCCAACTGAACGCTGATCTCCGCAAGCTGGCCGTCAACATGGTGCCCTTCCCACGTCTTCACTTCTTCATGCCCGGCTTCGCTCCCCTGACCTCCCGAGGATCCCAGCAGTACCGCGCCCTCACCGTGCCCGAGCTGACCCAGCAGATGTTCGATGCCAAGAACATGATGGCCGCCTGCGACCCACGCCACGGACGCTACCTTACCGTCGCCGCCATCTTCCGTGGACGCATGTCCATGAAGGAGGTCGACGAGCAGATGCTGAACATCCAGAACAAGAACAGCTCCTACTTCGTCGAATGGATCCCCAACAACGTGAAGACCGCCGTGTGCGACATCCCGCCCCGTGGTCTGAAGATGTCCGCCACCTTCATCGGCAACTCCACTGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACCGCTATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACCGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGATCTGGTGTCCGAGTACCAGCAGTACCAGGAGGCCACCGCCGACGAGGACGCCGAGTTCGAGGAGGAGCAGGAGGCTGAGGTCGACGAGAACTAAATTCGAATCGGAAATCAATCGAATTCTCGATCAATGTTTTGCGAAAAAAAATGAAACGAGAACAAATGAATTCAGTTGTAAAAGATTTGTTCTCTTAACAACGTAATCAATAAAGTCGGATCCAATTTTGTTCACAAGTCT |
PMID - Link | Title |
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