Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name betaTub97EFP1
Plot displaying the genomic locations of a retrocopy (in chr2R) and its respective parental gene (in chr3R). Each line represents a retrocopy.
Species Drosophila melanogaster
Coordinates chr2R:19447482-19448748  UCSC
Strand -
Parental Sequence NM_001170282.2
Parental seq. overlap 1069 bp
Parental seq. overlap (%) 62.7%
Genomic Region Intergenic
Retrocopy Summary betaTub97EFP1, located on chr2R:19447482-19448748, is a retrocopy of the parental gene betaTub97EF. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name betaTub97EF
Full Name beta-Tubulin at 97EF
Also known as 4t|B4t|BETA 98B|CG4869|DTB1|Dmbeta4|DmelCG4869|T|Tub|Tub2C|beta-Tub|beta-Tub97EF|beta-tub|beta4|beta4t|beta97F|betaTub4|betaTub98BC|betaTub98C|betatubulin
Coordinate chr3R:27967008-27988384
Strand -
Gene summary Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to be active in cytoplasm and microtubule. Is expressed in adult head; adult heart; muscle cell; neuromuscular junction; and spermatozoon. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 1 and congenital fibrosis of the extraocular muscles 3A. Orthologous to human TUBB3 (tubulin beta 3 class III); TUBB6 (tubulin beta 6 class V); and TUBB8 (tubulin beta 8 class VIII). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology

Expression

Related Sequence

>betaTub97EFP1
AGTTCTGGGAGATCATCTCCGATGAGCATGGCATCGATGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGAGCGCATCAATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCCGCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCGGGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGCTGGTGGACTCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGACTGCCTGCAAGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTCCGGTATGGGAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACAGGATCATGAACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACCGTTGTGGAGCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAACACGGACGAGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCTTCCGCACCCTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTTGTCTCCCTGACCATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGCCAACTGAACGCTGATCTCCGCAAGCTGGCCGTCAACATGGTGCCCTTCCCACGTCTTCACTTCTTCATGCCCGGCTTCGCTCCCCTGACCTCCCGAGGATCCCAGCAGTACCGCGCCCTCACCGTGCCCGAGCTGACCCAGCAGATGTTCGATGCCAAGAACATGATGGCCGCCTGCGACCCACGCCACGGACGCTACCTTACCGTCGCCGCCATCTTCCGTGGACGCATGTCCATGAAGGAGGTCGACGAGCAGATGCTGAACATCCAGAACAAGAACAGCTCCTACTTCGTCGAATGGATCCCCAACAACGTGAAGACCGCCGTGTGCGACATCCCGCCCCGTGGTCTGAAGATGTCCGCCACCTTCATCGGCAACTCCACTGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACCGCTATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACCGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGATCTGGTGTCCGAGTACCAGCAGTACCAGGAGGCCACCGCCGACGAGGACGCCGAGTTCGAGGAGGAGCAGGA
>NM_001170282.2
TCAGTTCACGTTGGATTCTCAAAGCGAACGCGTGTCGATCGTTCTGCTCACGAAAAGCTCTCCTCCGACTCTTCACCGGATTCAACCGAATGCGTGACCgattgtgactcagattcggattcagattcagattGATATAGTGGCTGATAATTGCTGATAGTGCGTGTGTGCGTCAGTGTGTTCAATTGAGTTAAGTTTGGCTGCCAAAAGTTACTAGTTCATTTGCGAAATGAGGGAAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGTTCTGGGAAATCATCTCCGACGAGCACGGCATCGATCCCAATGGTTACTACCACGGCGAGTCCGCCCTGCAGCACGAGCGGATCGATGTTTACTACAACGAGGCCAGCAGCGGGAAGTACGTGCCGCGAGCGGTGCTCATCGACCTGGAGCCGGGCACCATGGACTCCGTCCGCCAGTCGCCGGTGGGCCAGCTTTTCCGGCCAGATAACTTCGTTTACGGACAGTCGGGAGCCGGCAACAACTGGGCCAAGGGCCATTACACAGAGGGCGCCGAGCTGATCGATTCCGTGCTGGAGGTGCTGCGCAAGGAATCCGAGGGCTGCGACTGCCTGCAGGGCTTCCAGCTGGCTCACTCGCTTGGCGGAGGCACTGGCTCCGGCCTGGGCACGCTGCTCATCTCGAAGATTCGCGAGGAGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTATCCGACACTGTCGTGGAGCCGTACAATGCCACGCTGTCCATCCACCAGCTGGTGGAGAACACCGACGAGACATTCTGCATTGACAACGAGGCTCTCTACGACATCTGCTTCCGCACGCTGAAGCTATCGTCGCCCACCTACGGCGATCTGAACCATCTCGTCTCCGTCACAATGTCCGGAGTGACCACCTGCCTGCGCTTCCCTGGCCAGCTGAACGCTGATCTTCGCAAGCTGGCGGTGAACATGGTGCCCTTCCCGCGTCTGCACTTCTTCATGCCCGGATTCGCTCCGCTGACCGCCAAGGGATCCCAGCAATATCGCGCCCTCACGGTGGCCGAGCTGACCCAGCAAATGTTCGATGCCAAAAACATGATGACCGCCTGTGATCCCCGGCACGGACGCTACCTCACCGTGGCCTGCATCTTCCGGGGACCCATGTCCATGAAGGAGGTGGACACGCAGATGTACAACGTGCAGAGCAAGAACAGCAGCTACTTTGTCGAATGGATTCCCAACAACGTCAAGGTGGCCGTCTGCGACATCCCGCCCCGTGGGCTCAAGATGTCCGCCACCTTCATTGGCAACTCGACCGCCATCCAGGAGATCTTTAAGCGCATCTCCGAGCAGTTCACTGCCATGTTCCGGCGCAAGGCCTTCTTGCACTGGTACACCGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGATCTGATATCCGAGTACCAACAGTACCAGGAGGCTACCGCCGACGACGAAGTGGAGTTCGATGACGAGCAGGCCGAGCAGGAAGGCTACGAGTCGGAGGTCCTGCAGAACGGCAATGGCGAGTAAAGTCCTAGAAACTATCACAACTGTAGCTGTTTTCTGTATACTATTTTGTAAATTATTTGTCCCGAAAAGGCTTCAAATAAATATTTAGTAAATATAGT

Publications

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