Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGB3P8
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr10:116439208-116440067  UCSC
Coordinates (T2T) chr10:117333544-117334403  UCSC
Coordinates (hg19) chr10:118198720-118199579  UCSC
Strand -
Parental Sequence NM_005342.4
Parental seq. overlap 545 bp
Parental seq. overlap (%) 14.6%
Genomic Region Intragenic (PNLIPRP3)
Retrocopy Summary HMGB3P8, located on chr10:116439208-116440067, is a retrocopy of the parental gene HMGB3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGB3
Full Name high mobility group box 3
Also known as HMG-2a|HMG-4|HMG2A|HMG4
Coordinate chrX:150980507-150990773
Strand +
Gene summary This gene encodes a member of a family of proteins containing one or more high mobility group DNA-binding motifs. The encoded protein plays an important role in maintaining stem cell populations, and may be aberrantly expressed in tumor cells. A mutation in this gene was associated with microphthalmia, syndromic 13. There are numerous pseudogenes of this gene on multiple chromosomes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes HMGB3P14
Bonobo Pan paniscus HMGB3P13
Gorilla Gorilla gorilla HMGB3P16
Orangutan Pongo abelii HMGB3P17
Gibbon Nomascus leucogenys HMGB3P8
Green monkey Chlorocebus sabaeus LOC103232983P5
Crab-eating macaque Macaca fascicularis HMGB3P13
Rhesus Macaca mulatta HMGB3P14
Baboon Papio anubis HMGB3P10
Golden snub-nosed monkey Rhinopithecus roxellana HMGB3P25
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGB3P8
ATAAAGAAACTATTTATCTGTCTCCTTGTGAATACTTAGAGTAGGGGAGCTCTGTAATTGACACATTTCTTATCTGAGAAGTGTCTGTTGCCCTCATTAGGTTTAATTACAAAATTTGATCATGATCATATTGTAGTCTCTCAAAGTGCTCTAGAAATAGTCAGTGGTTTACAAGAAGTGGCCACGGGTGTCTGGAGCACCCTGAAACTGTATGAAAGTTGTACGTATTTCCAAACATTTTAAAAATGAAAATACTAGCGAACAATACAGTCAGGATGGCTAAAGGTGACCCCTAGAAACCAAACGGCAAGATGTCTGCTTATGCCTTCTTCGTGCAGACGTGCAGAGAAGAACATAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCAGAATTTTCCAAGAAGCGCTCTGAGAGGTGGAAGATAATGTCCGGGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGTGATTAAAGTGCGCTATGATCGGGAAATGAAGGATTATGAACCAGCTAAGGGAGGCAAGAAGAAGGATCCTAATGCCCCTAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATTCTGCGCCTAGATCAAATCCACAAACCCTGGCTTCTCTATTGGAGACGTGGCAAAAAAGCTGGGTGAGATGTGGAATAACTTAAATGGCAGCGAAAAAGCAGCCTTACATCACTAAGGTGGCAAAGCTGAAAAAGTATGAGAAGGATGTTGCTGACTATAAGTCGAAAGTAAAGTTTGATGGCGCAAAGCGTCCTGCTAAAGTTGCCCGGAAAAAAGTg
>NM_005342.4
gcgcgtcgtgccctgcgctgcCCAGACTAGCGAACAATACAGTCAGGATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCCGCTTATGCCTTCTTTGTGCAGACATGCAGAGAAGAACATAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCGGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACGATGTCCGGGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATTCCGCCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGACGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATTTAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCGGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTATAAGTCGAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAaggtggaagaggaagatgaagaagaggaggaggaagaagaggaggaggaggaggaggaggatgaATAAAGAAACTGTTTATCTGTCTCCTTGTGAATACTTAGAGTAGGGGAGCGCCGTAATTGACACATCTCTTATTTGAGAAGTGTCTGTTGCCCTCATTAGGTTTAATTACAAAATTTGATCACGATCATATTGTAGTCTCTCAAAGTGCTCTAGAAATTGTCAGTGGTTTACATGAAGTGGCCATGGGTGTCTGGAGCACCCTGAAACTGTATCAAAGTTGTACATATTTCCAAACATTTTTAAAATGAAAAGGCACTCTCGTGTTCTCCTCACTCTGTGCACTTTGCTGTTGGTGTGACAAGGCATTTAAAGATGTTTCTGGCATTTTCTTTTTATTTGTAAGGTGGTGGTAACTATGGTTATTGGCTAGAAATCCTGAGTTTTCAACTGTATATATCTATAGTTTGTAAAAAGAACAAAACAACCGAGACAAACCCTTGATGCTCCTTGCTCGGCGTTGAGGCTGTGGGGAAGATGCCTTTTGGGAGAGGCTGTAGCTCAGGGCGTGCACTGTGAGGCTGGACCTGTTGACTCTGCAGGGGGCATCCATTTAGCTTCAGGTTGTCTTGTTTCTGTATATAGTGACATAGCATTCTGCTGCCATCTTAGCTGTGGACAAAGGGGGGTCAGCTGGCATGAGAATATTTTTTTTTTTTAAGTGCGGTAGTTTTTAAACTGTTTGTTTTTAAACAAACTATAGAACTCTTCATTGTCAGCAAAGCAAAGAGTCACTGCATCAATGAAAGTTCAAGAACCTCCTGTACTTAAACACGATTCGCAACGTTCTGTTATTTTTTTTGTATGTTTAGAATGCTGAAATGTTTTTGAAGTTAAATAAACAGTATTACATTTTTAAAACTCTTCTCTATTATAACAGTCAATTTCTGACTCACAGCAGTGAACAAACCCCCACTCCATTGTATTTGGAGACTGGCCTCCCTATAAATGTGGTAGCTTCTTTTATTACTCAGTGGCCAGCTCACTTAGGGCTGAGATGAAGGAGAGGGCTACTTGAAGCTACTGTGTGATTTTGTTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGGAGTTAGGAGAACGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTGAGGCTATCTAGGTTTAACTTTTGTCCCACCTCCACCCCCTATTTTGTGGGGCCAAATGCATTGCTAAACAGCAATTTCAGAGTGTATGGTGTGTCAAAAATTAAGGCCTTATTGTTTTTCTCTTTCACCCCTACCCCCCGTGCTCCTGGCACATATCACATTATTTGTGGTGCCCAACATTTGGGGTCTTGAGCCTGCTGCTGGTCTCCTGGATGCCAGTGAGGGTATGTGGGATGGGGTGGTGGGGTAGGGGACGGTATCCTTTTTTTGCTCCTACTTGGAAACACCAAACACCCCAAGGAAGATGATAGGCTCCATCTTGGGCCACCTGAGCTATAGGGCAGGCTAATGGAATCAACCATTTCTGAGCACTAAATGTATCATGAAAAGTTGAATGGCCTGCTCATAAGTTTAGCTCATTCACTGGAAATGTAGATTGATGTTCAATGTTAAACTGGAAGGAGCTTGGTTTGTGTGTCAGTGGTTATATTAGTGGGTAGTGTAACATTTTATCCAGGTTGGGGTGAGGGGAGATGGCCACAGTAGCAAGTGGTGACACTAAATACCATTTTGAAGGCTGATGTGTATATACATCATTACTGTCCGTAGCAATGAAGGATACAGTACTGTGTTGTGGGTGAGTGTTGCTATTGCCCAGCATTAATATTTGGGTGTGTATGTTTGAGGCTATGAAACACGCAGGAGTGTTTTTGTGCTATTAATTTTAAGAGAAAGCAGCTTTTTCTTAAAATTCACTGTTGAGAAACTTGCATGTCTGGAGGCGGTGTCCTCTCCGCCCTGTCGGGTCCTGGATGAGTACGAGTTATGGTCACGGTCACAGCCTGATCTCTTATGTGTTCATAGCCATTCGCTCTCCCATCAGAACTGTTTGTCCTGAATGTGTTCCTCTAGTTCTAGAAAATGACCACTAATTTAAAAAACTCGGTTGTGAGGTTTGCCCAGAGGCACTTGTTCCAGAATTTCCCCTCCTGCTTCAGCCATGTCCTTGTCACTTGGCATTCTAAGCTAAAGCTTTAGCTTCCCAATTCGTGATGTGCTAGGCCAAGATTCGGGAGCTGTTGCCAGCCTCGTCAAATATGGAAGAGAAACAACCTGCGGTCAAAAGGGAGTGATTTGTTAAGTGGTGCGCGTCTATCTCATAACTAGATGTACCAACCAGGGAAGGGCCAAGGATGGAAAGGGGTAACTTTTGTGCTTCCAAAGTAGCTAAGCAGAAGTGGGGGAGCAGTTTAGCCAGATGATCTTTGATTAGGCAAACATTGAGTTTTAAAGAGGCTGTCAAGTTGAGGCCACTTGGTCCATTAGCTGGGGCAGCAAGATCACTACTCAACGTTTTCACACTGTGGCAAGATTGCTCTTCTAGTGGAATAATGCCCTAGTTTCTCTGAGATGATGTAAGTGGCATGATGTTACCTAAGGCTTAGGCTTAGCTTGATTTCTGGGCCCACTGTCTGTGTTCTTAAGATGCCAACCTGTTGCTTTTTTTTTTTTTTTCCCCCATTTAAAAGGATAGTACCTACTCCCTCTAACCACCTCACCCCATTCTTGAATGACATTTTATCCTTCGGAAAGAACAAGGCTGTGATGTAGTGACTATTGTCTGTGTCTCCTGTGTGTGTCTGTTCTTGTCACAAATGTATTTGGGGACGTTGGATGCATTCATTTTCTGTAATAAAGTTTCTTAATCACTCTTCCCAAAAA

Publications

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