Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FAM210CP
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr10:27348390-27350301  UCSC
Coordinates (T2T) chr10:27378502-27380413  UCSC
Coordinates (hg19) chr10:27637319-27639230  UCSC
Strand -
Parental Sequence NM_080821.3
Parental seq. overlap 1470 bp
Parental seq. overlap (%) 48.8%
Genomic Region Intergenic
Retrocopy Summary FAM210CP, located on chr10:27348390-27350301, is a retrocopy of the parental gene FAM210B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FAM210B
Full Name family with sequence similarity 210 member B
Also known as 5A3|C20orf108|dJ1167H4.1
Coordinate chr20:56358974-56368663
Strand +
Gene summary Involved in cellular response to estradiol stimulus and positive regulation of erythrocyte differentiation. Located in mitochondrial outer membrane. Is intrinsic component of membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FAM210BP1
Bonobo Pan paniscus FAM210BP1
Gorilla Gorilla gorilla FAM210BP1
Orangutan Pongo abelii FAM210BP1
Green monkey Chlorocebus sabaeus FAM210BP2
Crab-eating macaque Macaca fascicularis FAM210BP1
Rhesus Macaca mulatta FAM210BP1
Baboon Papio anubis FAM210BP1
Golden snub-nosed monkey Rhinopithecus roxellana FAM210BP1
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FAM210CP
AGGCCAGATGCCCGGCTGCTCCGCACAGCCGTGGGGACTGCCGCGGCAGCCAGGACCTCAGCCAGGCCACGGAGAGAACAGGCAGCAGCGTCAGCTGCACAGAGGAGAAAAAGCAAAGCAAGTCACAGCAACTGAAAAAGATTTTTCAAGAATATGACACTGTTGGCGTGTCGTTGTACACTGGAATCTCATTCATTTCCTTGGTCATATTTTACATGGTTGTGTCAAGTGGTGTGGACATGTCTGCAGTCCTGCTGAAACTCGGATTTAAAGAGTCCCTCGTACAGTCAAAAATGGCAGCAGGCACAAGTACCTTTGTGGTGGCCTATGCAATCCACAAGCTGTTTGCGCCAGTGAGAATCAGCATTACGTTAGTCTCTGTGCCCTTGATCGTCAGATAGTTTCGAAAAGTGGGATTTTTTAAAACCTCCAGCTGCAAAACCTTAATGAACTCTTCAGTCGTAGGCACTGAAAACCTATTTCTTCTAAATTACACAATTTGGATTGGTTTTAGGGTTGTAGGGTTTCTTTTGGAGGGGTAAGGGGCTAATTGCTATGTTCTCATGGATAAACTTTGCCAGCAAAAATCAGGCTTTTGAACAATTTTAATTTTTTTGCTTCACAAATTTTGTGAATGCTATTCATTATAGGACTTGTATATATAATCTAAAATGTCAGCAAGACATCACAGATGGGTTTACATCTCAAAACAAAATAGCCTACAGATGTTCCTTCTGGGAGATTTTTGGCAAGGGTCTGTCTGTAAAAGCTCCAGGGGATTAATCGTGACTCAGGTTCCTAAAAAACAATGATTAATTTAACTGGCTTTTAAATATCCCCTTCCGCTGATATTTGTTGTCAGCTGCCTACAGTTTAATATGCAGTGTTCTGCAAAACAGCTGCCAGTGCTACAATCAATGAAGCAAAACTTAATATGTATTCACAATCTAAATTAGTATCAATACTTTGACATTCATTACATTTGTTTTGGGGGAAGAAAAGTATTTCTGGTATGTTTCATTGGTCCCCAAACACCTTCCAATCTGGACATGATGGGGCTGATTCCAGATGGCTTTTCTGAAATTTTATTAAAGTAGGTCAGTGTCATTTGTTTAGATAAAATATGAAAACTCTGCCCAGTAGCAGTGGCATCACTTGATTCCTGATGCCCATGTTCCAGATACCACATATAAACAGTTAAGACAATCTTAGCTTTTCTTAGACAATCTTTATCTCAAACTTCAGACATTCCAGAATTGTCATGATGTTTACACTATCTCATTATTTTGAGTTAAAAATCCTGTTCAAGAAAAAAATTGTGTATCACTTCCTAAAAAGGAAAATTCATAGCACTTGTCACAAGTGGAAGGCAACTATACAAGCCAGGGAGGGGCTTGTATTACACAGGAAGGTGTAATTAGTCTGCCTAGCCAGTTTTATCCAATGAAAGGCATGTGTGTTAGAGAGATTAGCTAAGGGTAGAAATTCAAGCATAGAAGCTGCGCGCCATGGCCGTGTTGCTGGCGGGGCTGGGCCCGGCAGGCAGGGTGGGCGCCTGGGTCCGGCCTTGCGCCACATGGCTCCTGGGCGCGACCACc
>NM_080821.3
AGCGGCGCGGGTGCTGCGCCTAGCTGCGCACCATGGCCGGGTTGCTGGCGTTGCTGGGTCCGGCAGGCAGGGTGGGCGCCCGGGTCCGGCCTCGCGCCACCTGGCTCCTGGgcgccaccgccccctgcgccccgccgcccctggccctggccctgctcccgcccaggcTAGACGCCCGGCTGCTCCGCACGGCGCGCGGGGACTGCCGCGGCCACCAGGACCCCAGCCAGGCCACGGGGACAACAGGCAGCAGCGTCAGCTGCACAGAGGAGAAAAAGCAAAGCAAGTCACAGCAACTGAAAAAGATTTTTCAAGAGTATGGCACTGTTGGCGTGTCATTGCACATTGGAATCTCATTAATTTCCTTGGGCATATTTTACATGGTTGTGTCAAGTGGTGTGGACATGCCTGCAATCCTGCTGAAACTCGGATTTAAAGAGTCCCTGGTACAGTCAAAAATGGCAGCAGGCACAAGTACCTTCGTGGTGGCCTATGCAATCCACAAGCTGTTTGCGCCAGTGAGAATCAGCATTACGCTAGTCTCTGTGCCCTTGATTGTCAGATATTTTCGAAAAGTGGGATTTTTTAAACCTCCAGCTGCAAAACCTTAATGAACTCTTCAGTCGTACACACTGAAAACCTATTTCTTCTAAATTACATGATTTGGATTGGTTTTAGGGTTTTAGGGTTGTAGGGTTTCTTTTGGAGAGGTAGGGGGCTAATTGCTATGTTCTCATGGATAAACTTTGCCAGCAAAAATCAGGCTTTTGAACAATTTTAATTTTTTGCCTCATAAATTTTGTGAATGCTATTCATTATAGGGCTTGTATATATAATCTAAAATGTCAGCAAGGCATCGGAGATGGGTTAACATCTCAAAACAAAATAGCCTACAAATGTTCCTTGTGGGAGACTTTGGCGAGGGTCTGTGGGTAAAAGCACCAGGGGGTTAATCTTGGCTCAGTTTCCTAAAAAGCATTGATTAATTTAACTGGCTTTTAAATATCCCCTTCCGCTGATATTTGTTGTCAGCTGCCTACAGTTTAATATGCAGCGTTCACAAAACAGCTGCCAGTGCTACAATTAATGAAGCAAAACTTAATATGTAATCACAATCTAAATTAGCATCAATACTTTGACATTCATTACATTGGTTTGGGGGAAGAAAAGTAGTTCTGGTATGTTTCATTGATCCCCAGATACCTTCCAATCTGGACATGATGGGGCTGATTCCAGATGGTTTTTCTGAAATTTCATTAAGGTAGGTCAGCGTCATTTGTCTCTGTTTAGGTAAAATATAAAAACCCTGCCCAGTAGCAGTGGCATCGCTTGGTTCCTGATGCCCATGTTCCAGAGGAATTCGGATACCACAAACAGCTAAGACAATCTCAGCTTTTCTTAGACAATCTTCTATCTCAAACTTCAGACATTCCAGAATTGTCATGATGTTTACACTGTCTGAGTTAAAAATCCTGTTCAAGAAaaaaaaagattttgtatcacttcttaaaaaggaatattcatagcacttgtcacaaatagaaggcaaccatgagataatacaaGCCAGGGAGAGGCTTGTATTACATGACAGGTGTAATTAGTCTGCTGAGCCAGCTTTACCCAATGAAGGGCATATGTGTTAGAGAGATTAGCTAAGAGTAGAAATTCGAGCATAGAggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggttgaggcaggcgtgtcacttgaggccaggagttcgagaccagcctggccaacatgatgaaaccccgtctctactacaaatacaaaaattagccgggtgtggtggcacacgcctgtagtcccagctactggggaggctgaggcagcattgcttgaacccaggaggtggaggttgcagtgagccaagatcacaccactgcactccagcctgggcgacagagggagacactgtctccaaaagaaagaaaTCCCAGCGTAGATCCAAACTGAGACACTGAGGCTTCGTCCTTATAGTAGTCAGGAGCAGGCGATTGAAGTAATTCTGTCCTGCGGGGTTCAGCATCATGCACGTTCCCCCTGGGCCATTCTCTGATGCAGGGCACTTGCTCCACACTCTGGGAACCCAGATTCACCAGTCTGCCCTGTCACGTAGTTGAAGGAGTTGCATTTATCTTTCTGGCTCCTAATTCCTTTAAAATTACATTTGTTGCAGAACCTCCACAAGGCTAAATAAAATTACATTTGTGACCATCAGAGAACTGAATAAACCATTAACTGGCCATCCTGGTTTTGCAGAGATCAGGTTGTTGACAGTTCCTGGTTGACCCACAGCTACCCATGTCAGTTATCTCCACTAACATATCCAAGAATCTTTGTAGGACAATTTCTCCACCTGCAAGGTCTTTCAGGTAGAACTCTTCTTTTAAGGCAATTAGCCCATTGCCAAAAGGTTTTACTGTCTTAAAGCTGTCTTTCTGAGATCTAATTCCAAGGACTTCTCCACAGCTAAGTGAGATGCCTCACACCATTAGGTGATGCTTTGGACAGAACAGAGTATTTTCATCTTGTGTTTAAAGCAATTCCTTGGCTTCGGCTCCTCACCACTTTCTATGCCAGTCTCCCATTTATGTCCCTAGTAATGCCTATGCaaaaaaaaaaaaagaaaaaaaagaaaaaCTGATGGTGAAACCTACAGGTTTAAGGGCTTAAATCTCAAACTTTGTTAGGAGTAACAGGAGCGTGCTGAGCGGGCAAGCAATAAAACAAATCATACCAAAAAGCCACATTGCTCTCTCCTAAGCCCCAACCCCACTCCACTCCTGTGGCCAGGGGTCCAAACAGAAAATAACCGGAGAAGACAAGGAGGTCAAAGGATCAGGGAACTAAGCATTATGTGAATTCACCAGCAAGATGTACAGAACGCCTGTGTTTACATTGTTTTTATGGAACTAGCAGAATAAAACATCTATTTTAAAAATGAAA

Publications

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