Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TMEM161BP1
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr10:37337412-37339860  UCSC
Coordinates (T2T) chr10:37381321-37383769  UCSC
Coordinates (hg19) chr10:37626340-37628788  UCSC
Strand +
Parental Sequence NM_001289008.2
Parental seq. overlap 2281 bp
Parental seq. overlap (%) 79.1%
Genomic Region Intergenic
Retrocopy Summary TMEM161BP1, located on chr10:37337412-37339860, is a retrocopy of the parental gene TMEM161B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TMEM161B
Full Name transmembrane protein 161B
Also known as FLB3342|PRO1313
Coordinate chr5:88179300-88268906
Strand -
Gene summary Predicted to enable nucleic acid binding activity. Predicted to be involved in DNA integration. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes TMEM161BP1
Gorilla Gorilla gorilla TMEM161BP1
Gibbon Nomascus leucogenys TMEM161BP1
Green monkey Chlorocebus sabaeus TMEM161BP1
Crab-eating macaque Macaca fascicularis TMEM161BP1
Rhesus Macaca mulatta TMEM161BP1
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TMEM161BP1
GTGTGATAGGTATACAGCTGTTGTTACCATGGTGATGGCCAGTGTCATGCAGAAGATTATACCTCGCTATTCTCTTGCTCAATGGCTACTCTGTAATGGCAGTTTGAGGTGGTATCAACATTCTACAGTAGAAGAATCAAGAATTCTTGCAGGGAATCAGCAAAAAGAGAAAAGCAAAAAAGATAGGAAATATAATGGTCACACTGAAAGTAAGCCATTAACCATTCCAAAGGATATTGACCTTCGTCTAGAAACAAAGTCAGTTACAGAAGTGGATACATTAGCATTGCATTACTTCCCAGAATACCAGTGACTGGTGGATTTCACAGTGGCTGCTACAGTCGTGTATCTAGTAACTGAAGTCGACTACAAGTTTATGAAGCCTACACAGGAAATAAATATCAGCTTAGTCTGGTGCCTGCTTGTTTCGTCTTTTGCAATCGAAGTTCTATTTTCATTAATTACACACTATTTTAAAGTAGAAGATGCTGGTGAAAGATCTGTTTGTGTCACCTTTGGATTTTTTTTCTTTGTCAAAGCAATGGCAGTGTTGATTGTAACAGAAAATTATCTGGAATTTGGACTTGAAACAGGGTTTACAAATTTTTCAGGCAGTGCGATGCAGTTTCTTGAAAAGCAAGGTTTAGAATCTCAGAGTCCTGTTTTAAAACTTACTTCCAAATTTTTTCCTGGCTATTTTCTGTTCACTCACTGGGGCTTTTTTCACATTTCCTGGATTACGGCTGGCTCAAATGCATCTGGATACCCTGAATTTGGCAACAGAAAAAATTACACAAACATTATTTCATATCAGCTTCTTGGCACATTTATTTATGGTTCTGCTCTGGGTAAAACCAGTCACCAAAGACTACATTATGAACCCAACCTTGGGTGAAGAAAGCATCACTTTAATGACAGAAGCCACATTTGGTACTCTGCAAATCTGGTTAATAATCCTGCTGTGTGCTTTGCGGTTGGCCATGATGCATAGTCACCTGCAAGCTTATTTAAATTTAGCCCAAAAATGTGTGGATCAGATGAAGAAAGAAGCAGGGTGAATAAGTACAGTTGAGCTACAGAAAATGGTGGCTTGAGTCTTTTATTATCTTTTTGTCATTGCACTGCAGTATGTGGTGCCTCTGGTAACACTGTTTCACACAACTCTGCTTTTGAAAACACTAGGTAATCATTCCTGGGGTATTTATCCAGAATCTGTCTCTACCTTACCAGTGGATAATAGTCTACTCTACAATTCTGTTTACTCTGAATTACCATCAGCTGAAGAGAAGATGAAGGTTACTGTTACACAAATAACAGTGGCACTGAGCAGCTTAAAAACATTTTTACACTTCTTGTTTTTTGAGGACTTCTGTCTTTTCTGACCTGGTAGATTGCTGCTTGCCTCTTTTCTACAAGCCTTTTTGGGCTTTTTTATCACCAGTATCTGACTGTGGCATGAATCTCAGTTAACAAAAAAGCATATCAAAATCACAGTTTAAATTCAAATATTTGTGCCCTTAAAGGGCTGACGAAAACCAGAAGAAAGCAAATACAATGGAAAAAAATCAGAATATCTTGTATTAAATGTTTCCTCTGTATTCTCAGGGTGAATTAATGTTAAAATTACAAAATAGATTGTTAACTGTTACACTGTGGCATTGGAATTTTAACTGTTGGTATTTACTGGTATGAGGGCTATCTACAAGGGTAATATTTCTGATTACCTTGGCTTACAGAAACCTCCAGCAGTCTTTGAAACATCTCACATGACTCCAGTTATTGATTGCTTTTAATGGTATTATGGTACTGCTGGTCGTCATAGTGGCTGCCTATAGAACAATCTTCAAACTGAGCCATGCTTTAGGGGAGAGAAAGGGGCTAAAGTCTCTTCTGTTGGTAATATATTAGTTACTCTTGAAACGATAAAATCCAACAGAAAGGAAGAGATAGCTACTGTATATTATAGTAAAGAAAGCTGCATAGTTATTTTAAATTTAGTGGAGATGAATATGGTTATTATCTACAACTACTGCTGCTTGAGAATGGCAAGAGTATTGTTTTAAAACATATTCTACCCACCTTGAGAGTTCTTTTAAAATGATTGGCCATATGAACACTTGTAATCTTGCCATTAGGCTTAGACCTGCCATATTTTTTTTATTCTATGATCCTAAATAGTTCCTTTTAATAGTCTAAAAATATTTATCAATACTGATCAGACTTTAAAGAAATTACTTTGTAAACTTGCTGACTACCTGTATGTATTGTACATCaGTGATTCCTTATAACATTTTAAGTTGCAGAATGTATGTTAAAAAGTGATTTGAATGAGATGTATTTGTATCTAGAAATTTTATTTCTTTTTGGAATGCGATTAAAATACATTTTGAAAGTTCA
>NM_001289008.2
AGAGCCGGAAGACCCTCTCTTTCGCTGTTTGAGAGTCTCTCGGCTCAAGGACCGGGAGGTAAGAGGTTTGGGACTGCCCCGGCAACTCCAGGGTGTCTGGTCCACGACCTATCCTAGGCGCCATGGTTGCAAAGAAGAATGTAATCTTGTAGAGTACCTTGCCTTCCCTTCCATACATTCAGCAGACATAGTTCCTTTAAGGGATTTTACTGCTAGGAGAATTTCATAGGTCATATTCCCATGTTACTGCTTCACAGGGTGTGATAGGTATACAGCTGGTTGTTACCATGGTGATGGCCAGTGTCATGCAGAAGATTATACCTCACTATTCTCTTGCTCGATGGCTACTCTGTAATGGCAGTTTGAGGTGGTATCAACATCCTACAGAAGAAGAATTAAGAATTCTTGCAGGGAAACAACAAAAAGGGAAAACCAAAAAAGATAGGAAATATAATGGTCACATTGAAAGTAAGCCATTAACCATTCCAAAGGATATTGACCTTCATCTAGAAACAAAGTCAGTTACAGAAGTGGATACTTTAGCATTGCATTACTTTCCAGAATACCAGTGGCTGGTGGATTTCACAGTGGCTGCTACAGTTGTGTATCTAGTAACTGAAGTCTACTACAATTTTATGAAGCCTACACAGGAAATGAATATCAGCTTAGTCTGGTGCCTACTTGTTTTGTCTTTTGCAATCAAAGTTCTATTTTCATTAACTACACACTATTTTAAAGTAGAAGATGGTGGTGAAAGATCTGTTTGTGTCACCTTTGGATTTTTTTTCTTTGTCAAAGCAATGGCAGTGTTGATTGTAACAGAAAATTATCTGGAATTTGGACTTGAAACAGGGTTTACAAATTTTTCAGACAGTGCGATGCAGTTTCTTGAAAAGCAAGGTTTAGAATCTCAGAGTCCTGTTTCAAAACTTACTTTCAAATTTTTCCTGGCTATTTTCTGTTCATTCATTGGGGCTTTTTTGACATTTCCTGGATTACGACTGGCTCAAATGCATCTGGATGCCCTGAATTTGGCAACAGAAAAAATTACACAAACTTTACTTCATATCAACTTCTTGGCACCTTTATTTATGGTTCTGCTCTGGGTAAAACCAATCACCAAAGACTACATTATGAACCCACCACTGGGCAAAGAAAGTATCCCTTTAATGACAGAAGCCACATTCGATACTCTGCGACTCTGGTTAATAATCCTGCTGTGTGCTTTGCGGTTGGCCATGATGCGTAGTCACCTGCAAGCTTATTTAAATTTAGCCCAAAAATGTGTGGATCAGATGAAGAAAGAAGCGGGGCGAATAAGCACGGTTGAGCTACAGAAAATGGTGGCTCGAGTCTTTTATTATCTTTGTGTCATTGCACTGCAGTATGTGGCGCCTCTGGTAATGCTGCTTCACACAACTCTGCTTTTGAAAACACTAGGTAATCATTCCTGGGGTATTTATCCAGAATCTATCTCTACCTTACCAGTGGATAATAGTCTACTGTCCAATTCTGTTTACTCTGAATTACCATCAGCTGAAGGGAAAATGAAGGTAACTGTTACACAAATAACAGTGGCACTGAGCAGCTTAAAAAATATTTTTACTCCTCTTCTTTTTCGAGGACTTCTGTCTTTTCTGACCTGGTGGATTGCTGCTTGCCTCTTTTCTACAAGCCTTTTTGGGCTTTTCTATCACCAGTATCTGACTGTGGCATGAATCTCAGTTAACAAAAAAGCATATCCAAATCACCCTTTAAATTAAAATATCTGTGCCCTTAAAGGGCTGATGAAAACCAGAAGAAAGCAAATACAATGGGAAAAAAAAAACATATCAGAATGTCTTGTATTAAATGTTTCCTCTGTATTCTCAGGGTGAATTAATGTAGTAATATTTAAAATTACAAAATAGATTGTTAACTGTTACACTGTGGCATTGGAATTTTAACTCTTTGTATTTACTGGTATGAGAGGGCTATCTACAAGGGTAATATTTCTGATTACCCTGGTTTACAGAAACCTCCAGCAGTCTTTGAAACATCTCACATGACTCTAGTTATTGATTGCTTTTAATGGTTTTATGGTACTGTTGATAGTCATAGTGGCTGCCTATAGAACAATCTTCAAACTGAGCCATGCTTTAGGGGAGGGAAAGGGGCTAAAGTCTCTTCTGTTGGTAATTTATTAGTTACTCTTGAAACAATAAAATCCAACAGAAAGGAAGAGATAGCTACTGTATATTACAGTAAAGAAAGCTGCATAGTTATTTTAAATTTAATGGAGATGAATATGGTTAAAATATATAACTACTGCTGCTTGAGAATAGCAAGAGTATTGTTTTAAAACATATTCCACCCAACTTGAGAGTTCTTTTAAAATGATTGGCCATATGAACATTTGTAATCTTGCCATTAGGTTTGGACCTGCCATATTTTGTTTTATTCTGTGATCCTAACTAGTTCCTTTTAATAGGCTAAAATATTTATCAATACTGATCAGACTTTAAAGAAATTACTTTGTAAACCTGCTGACTACCTGTATGTATTGTAtatatattatatattaaatatataatatattgagattataaaagatgaaaatattgaatccttataatattTTAAGTTGCAGAATGTATGTTAAAAAGTGACTTGAATGAGATGTATTTGTATCTAGAAATTTTATTTCTTTTTGGAATGAGATTAAAATACATTTTGAAAGTTCAGCAGAGTAAGCAATTTATTTGTGTTGCCTATGTGTGAGTGTATTTAAAGTTTTATGGACGCTTAATGGTTTCTCCCAAATTAAAATTCTTTTTCTGTCATTTCCAAAAATCAGAATCTTTCCCTCTCAAATCAGGTCTACAGGTATCATGTATGCCTTT

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