Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DBF4P1
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr10:64168742-64171090  UCSC
Coordinates (T2T) chr10:65026611-65028959  UCSC
Coordinates (hg19) chr10:65928503-65930851  UCSC
Strand -
Parental Sequence NM_006716.4
Parental seq. overlap 2290 bp
Parental seq. overlap (%) 62.6%
Genomic Region Intergenic
Retrocopy Summary DBF4P1, located on chr10:64168742-64171090, is a retrocopy of the parental gene DBF4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DBF4
Full Name DBF4 zinc finger
Also known as ASK|CHIF|DBF4A|ZDBF1
Coordinate chr7:87876493-87909553
Strand +
Gene summary Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of nuclear cell cycle DNA replication and regulation of cell cycle phase transition. Located in nuclear body. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes DBF4P1
Gorilla Gorilla gorilla DBF4P1
Orangutan Pongo abelii DBF4P1
Gibbon Nomascus leucogenys DBF4P1
Bonobo Pan paniscus Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DBF4P1
AAATCTTCAACCGCTGCAGCCCCCTCGTTTGTGATTTGCGCCTTCCTCCTCCGTGCCTTGGAGCCGGATCCGGCCCCGGAAACCCGACCCACAGACGCGGTACCTCTACTGCGTAGAGGCCGTAGCCAGCGGAAGTAGAGAGGCGGCCGTCCTGTCAACAGACGTGGGGAAGCCTTGCTTTCGCGGCTGCCCGGCGCGACCCTTTCTCCGGACCCAGCATGTAGGTGCCGGGCGACTGCCATGAACTCTGGAGCCGTGAGGATCCACAGTAAAGGACATTTCCAGGGTGGAATCCAAGTCAAAAATGAAAAAAACAGACCATCTTTGAAATCTCTGAAAACTGATAACAGGCCAGAAAAATCCAAATATAAGCCACTTTGGGGAAAAGTATTTTACCTTGACTTACCTTCTGTCACCATATCTGAAAAACTGCAAAAGGACATTAAGGATCTGGGAGGGCGAGTTGAAGAATTTCTCAGCAAAGATATCAGTTATCTTATTTCAAATAAAAAGGAAGCTAAATTTGCACAAACCTTGGGTCGAATTTCTCCTGTACCAAGTCCAGAATCTGCAAATACTGCAGAAACCACTTCACCTCATCCCAGCCATGATGGAAGTTCATTTAAGTCACCAGACACAGTGTGTTTAAGCAGAGGAAAATTATTAGTTGAAAAAGCTATCAAGGACCATGATTTTATTCCTTCATATAGTATATTATCAAATGCCTTGTCATGGGGAGTAAAAATTCTTCATATTGATGACATTAGATACTACATTGAACAAAAGAAAAAAGTTGCATTCACTCAAGAAATCAAGTACTTCAGTAAGAGATGGGGGCAAAAGAGTTGGTAGTGGTGCACAAAAAACAAGAACAGGAAGACTCAAAAAGCCTTTTGTAAAGGTGGAAGATATGAGCCAACTTTATAGGCCATTTTATCTTCAGCTGACCAATATGCCTTTTATAAATTATTCTATTCAGAAGCCCTGCAGTCCATTTGATGTAGACAAGCCATCTAGTATGCAAAAGCAAACTCAGGTTAAACTAAGAATCCAAACAGATGGCGATAAGTATGGTGGAAACTCAATTCAACTCCAGTTGAAAGAGAAGAAGAAAAAAGGATATTGTGAATGTTGCTTGCAGAAATATGAAGATCTAGAAACTAATAAAATACAGTGTTGGATCCCTTTCTCCTGTTTCTGCAAGTGTCCTGAAAAAGACTGAACGAAAGGAAAAAGTGGAATTGCAACATATTTCTCAGAAAGATTGCCGGGAAGATGATATAACGGTGATAGAGCAGAATTTCCTGTATAAAGAGACCCAGGAAACTGAAAAAAACTTCTGTTTATTTCAGAGCCCATCCCCCACCCTTCAAATGACTTGAGAGGGCTTAACAAGAAAATGAGTAATAAATGTTCCATGTTAAGTACAGCTGAAGATGACATAAGACAGAATTTTACACAGCTACCTCTACATAAAAACAAACAGGAATGCATTCTTGACATTTCCGAACACACATTAAGTGAAAATGACTTACAAGAACTAAGGATAGATAACTATAAATGTAACATACAGGCATCTGTTCATGTTTCTGATTTCTGTACAGATAATAGTGCATCTCAACCAAAACAAAAGTCAGATCCTGTGCTTTTTCCAGCAAAGGATCTCAAGGAAAAGGACCTTCATTCAATATTTACTCATGATTCTGGTCTGATAACAATAAACAGTTCACAAGAGCACCTAACTGTTCAGGCAAAGGCTCCATCACATACTCCTCCTGAGGAACCCAATGAATGTGACATCAAGAATATGGATAGTTTACCTTCTGGTAAAATACATCGAAAAGTGAAAATATTATTAGGACAAAATAGAAAAGAAAATCTGGAACCAAATGCTGAATTTGATAAAAGAACTGAATTTATTACACAAGAAGAAAACAGAATTTGTAGATCACCGGTACAGTCTTTACCAGACTTGTTTCAGACTAGTGAAGAGAAATCAGAATTTTTGGGTTTCACAAGCTATACAGAAAAGAGTGGTATATGCAATGTTTTAGATATTTGGGAAGAGGAAAATTCAGATAATCTGTTAACAGTGTTTTTCTCGTCCCCTTCAACTTCTACATTTACTGGCTTTTAGAATTTAAAAAATGCATACTTTTCAGAAGTGATAAGGATCATATTCTTGAAATTTTTATAAATATGTATGGAAATTCTTAGGATTTTTTTTACCAGCTTTGTTTACAGACCCAAATGTAAATATTAAAAATAAATGTTTGCAATTTTCTACAGAATTGAATGCCTGTTATAGAAAAATTACAGAATAAACTTGTGACTGGTCTTATTTTACAG
>NM_006716.4
AAATCTTCAACCGCCGCAGCCCACTCGTTTGTGCTTTGCGCCTTCCTCCTCCGCGCCTTGGAGCCGGATCCGGCCCCGGAAACCCGACCTGCAGACGCGGTACCTCTACTGCGTAGAGGCCGTAGCTGGCGGAAGGAGAGAGGCGGCCGTCCTGTCAACAGGCCGGGGGAAGCCGTGCTTTCGCGGCTGCCCGGTGCGACACTTTCTCCGGACCCAGCATGTAGGTGCCGGGCGACTGCCATGAACTCCGGAGCCATGAGGATCCACAGTAAAGGACATTTCCAGGGTGGAATCCAAGTCAAAAATGAAAAAAACAGACCATCTCTGAAATCTCTGAAAACTGATAACAGGCCAGAAAAATCCAAATGTAAGCCACTTTGGGGAAAAGTATTTTACCTTGACTTACCTTCTGTCACCATATCTGAAAAACTTCAAAAGGACATTAAGGATCTGGGAGGGCGAGTTGAAGAATTTCTCAGCAAAGATATCAGTTATCTTATTTCAAATAAGAAGGAAGCTAAATTTGCACAAACCTTGGGTCGAATTTCTCCTGTACCAAGTCCAGAATCTGCATATACTGCAGAAACCACTTCACCTCATCCCAGCCATGATGGAAGTTCATTTAAGTCACCAGACACAGTGTGTTTAAGCAGAGGAAAATTATTAGTTGAAAAAGCTATCAAGGACCATGATTTTATTCCTTCAAATAGTATATTATCAAATGCCTTGTCATGGGGAGTAAAAATTCTTCATATTGATGACATTAGATACTACATTGAACAAAAGAAAAAAGAGTTGTATTTACTCAAGAAATCAAGTACTTCAGTAAGAGATGGGGGCAAAAGAGTTGGTAGTGGTGCACAAAAAACAAGAACAGGAAGACTCAAAAAGCCTTTTGTAAAGGTGGAAGATATGAGCCAACTTTATAGGCCATTTTATCTTCAGCTGACCAATATGCCTTTTATAAATTATTCTATTCAGAAGCCCTGCAGTCCATTTGATGTAGACAAGCCATCTAGTATGCAAAAGCAAACTCAGGTTAAACTAAGAATCCAAACAGATGGCGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAAAAAAGGATATTGTGAATGTTGCTTGCAGAAATATGAAGATCTAGAAACTCACCTTCTAAGTGAGCAACACAGAAACTTTGCACAGAGTAACCAGTATCAAGTTGTTGATGATATTGTATCTAAGTTAGTTTTTGACTTTGTGGAATATGAAAAGGACACACCTAAAAAGAAAAGAATAAAATACAGTGTTGGATCCCTTTCTCCTGTTTCTGCAAGTGTCCTGAAAAAGACTGAACAAAAGGAAAAAGTGGAATTGCAACATATTTCTCAGAAAGATTGCCAGGAAGATGATACAACAGTGAAGGAGCAGAATTTCCTGTATAAAGAGACCCAGGAAACTGAAAAAAAGCTCCTGTTTATTTCAGAGCCCATCCCCCACCCTTCAAATGAATTGAGAGGGCTTAATGAGAAAATGAGTAATAAATGTTCCATGTTAAGTACAGCTGAAGATGACATAAGACAGAATTTTACACAGCTACCTCTACATAAAAACAAACAGGAATGCATTCTTGACATTTCCGAACACACATTAAGTGAAAATGACTTAGAAGAACTAAGGGTAGATCACTATAAATGTAACATACAGGCATCTGTACATGTTTCTGATTTCAGTACAGATAATAGTGGATCTCAACCAAAACAGAAGTCAGATACTGTGCTTTTTCCAGCAAAGGATCTCAAGGAAAAGGACCTTCATTCAATATTTACTCATGATTCTGGTCTGATAACAATAAACAGTTCACAAGAGCACCTAACTGTTCAGGCAAAGGCTCCATTCCATACTCCTCCTGAGGAACCCAATGAATGTGACTTCAAGAATATGGATAGTTTACCTTCTGGTAAAATACATCGAAAAGTGAAAATAATATTAGGACGAAATAGAAAAGAAAATCTGGAACCAAATGCTGAATTTGATAAAAGAACTGAATTTATTACACAAGAAGAAAACAGAATTTGTAGTTCACCGGTACAGTCTTTACTAGACTTGTTTCAGACTAGTGAAGAGAAATCAGAATTTTTGGGTTTCACAAGCTACACAGAAAAGAGTGGTATATGCAATGTTTTAGATATTTGGGAAGAGGAAAATTCAGATAATCTGTTAACAGCGTTTTTCTCGTCCCCTTCAACTTCTACATTTACTGGCTTTTAGAATTTAAAAAATGCATACTTTTCAGAAGTGATAAGGATCATATTCTTGAAATTTTTATAAATATGTATGGAAATTCTTAGGATTTTTTTACCAGCTTTGTTTACAGACCCAAATGTAAATATTAAAAATAAATATTTGCAATTTTCTACAGAATTGAATACCTGTTAAAGAAAAATTACAGAATAAACTTGTGACTGGTCTTGTTTTACATTATATATATGTTCGTAATTGTTTCCTGAGAATTACAATGAATAATAATTTGCTTTGTCACTGAAAACCACCAGTGAAGTGCAATTTGGGGAATATCAAACTTAGCATTATACATTTGGATATTCTAGTTGTATTGTAAATTTTAAAAGATTATCAGGATAACATGACCTTGCCTTGAAAAACCTAAATTTCATACAGAAAGGAAAAATACATTTCTATGCTTGAATTCTGGAAATCATCAGAAATATTGACACTTGAGGGTCACTGGTGGACCATGCTAGTATTTTGGTGCTGAGTAATTAGATTATGTATAGGGGTAACTGGAAGCCATGAAGGAAGGACTTAACCAGGCTACCAAGTGGAATATAATTTATCTGCTATTTTTAATTACTTACCTTGTAAATAACTTTAATAATATTCAAAAGTTGACTCTCCTgtggctcatgccacaggatcccagcactttgggaggccgaggcaggctgatcacgaggtcagaagatcaagaccatcctggccaacatggtgaaaccttgtctactaaaaatacaaaaaattagctgggcatggcggcatgcgcctgtagtcccagctactccctccagaggctgagaattgcttgaacctgggaagtgcaggttgcagtgagccaagattgtgccactgtattccagactgggtgacagagtgagactccatctcaaaaaaaaaaaaGTTGACTCTACCCCCTAATTTGGTAGGAGATGAAGGAGAAAAGGATGGCATTGAATTATAGATACAGTTTTGGGATATATACAAGGATTGCCTTGATCTGGCACTTACTGATACAAGCATTTGGAGAAGAGAAAATTCAAATATAAGAAATTTCAATTTGAATCTGTGGATATAAGGCATTTGCCTTTGAGTATGTTCTTGTAGGAGTAAGACTACCACCAGTGACATTCAATTGGTTCTATTGCATAGTACATGAATCTATTGTCACTAAAAATTAGGTTACTAATCTTAATTTTTTTGAAATATATGATTCTCAGTACAGGACTAATTCATATGCTTTTCCTGCATACATTATTTTGATCATTTGGATAACATCAATGAACACTGGCTTTTTAACACCTTTGTTTTTCATACCAGTACCTGAAGTAGGCTCAATAAAAGAGTCTTTACAGTGCATACACGCAAA

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