Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ATXN1LP4
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr10:73740537-73741092  UCSC
Coordinates (T2T) chr10:74611953-74612508  UCSC
Coordinates (hg19) chr10:75500295-75500850  UCSC
Strand -
Parental Sequence NM_001137675.4
Parental seq. overlap 523 bp
Parental seq. overlap (%) 6.6%
Genomic Region Intergenic
Retrocopy Summary ATXN1LP4, located on chr10:73740537-73741092, is a retrocopy of the parental gene ATXN1L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ATXN1L
Full Name ataxin 1 like
Also known as BOAT|BOAT1
Coordinate chr16:71845976-71857328
Strand +
Gene summary Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in several processes, including learning or memory; regulation of transcription, DNA-templated; and social behavior. Predicted to act upstream of or within several processes, including lung alveolus development; negative regulation of transcription by RNA polymerase II; and positive regulation of hematopoietic stem cell proliferation. Located in nucleolus and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ATXN1LP2
Bonobo Pan paniscus ATXN1LP3
Gorilla Gorilla gorilla ATXN1LP1
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ATXN1LP4
GGGTATGGGGCGGCTCCAGGGCCAGGGATGGGACGGCCACAGTTGCGGCAGCTCCAGGACGAGCAAGTGGATCCCGGGAAGCGCTGTGAGCTCCCGAGCCAGCCGGGAGGACGCTTACTACAGCTGCTCAGAAGCACTGCTGGAAGCTCAGATGTGGGCGCCCCAGCCAGAAACCTAGAGGGGTACAGGGAAACTACCGAGAAGCCCCTCCTGATGCCCCAGGGAGCAAGCCAACTCCTTCCAGGCTCCAGGAACACCACAAAGCAATATGAAACCTGTTCATGAGAGGAGTCAGGAATGCCTTCCACCAAAGAAACGAGACCTCCCCACAACCAGCTGCTCCACTAACCACACACCCTCCAGTGATGCCTCTGAATGGTCCCCAGGGGTTGTGGTGGCTGGGCAGAGCCAGAGTCCGCCTCGGGGTGATGGAGCTGTGGCCATCACCGGTCTGACAGTGGACCAGTATGGCATGCTGTATAAGGTGGCTGTGCCGCCTGCCACCTTCTCACCAACTGGACTCCCATCTGTGTGAATATGAGCCCCTTGCCCCCAG
>NM_001137675.4
ATCTCCGGGCGCCCGGCTGTGGGGGGCGCTGGGTGTGGGGCGGCTCCGGGGCCGGGGATGGCGGCGGCCGCGGTTGCGGCGGCTCCGGGACGAGTGAGTGGATCCTGGGAAGCGCTGTGAAATGGGCTGGCTCCCGAGCCAGCCGGGAGGACACTTACTacagctgctcagaagcaccactggaaactcagATGTGGGCGCCCCAGCCAGAAGCAGAGAGGGGTACAGGGAAGCTACAGAGAAGCCCCTTCTGATGCCCCAGGGAGCAAGTCGACTCCTTCCAGGCTCCAGGAACACCACAAAGCAATATGAAACCTGTTCATGAAAGGAGTCAGGAATGCCTTCCACCAAAGAAACGAGACCTCCCCGTGACCAGCGAGGATATGGGGAGAACTACCAGCTGCTCCACTAACCACACACCCTCCAGTGATGCTTCTGAATGGTCCCGAGGGGTTGTGGTGGCTGGGCAGAGCCAGGCAGGAGCCAGAGTCAGCCTGGGGGGTGATGGAGCTGAGGCCATCACCGGTCTGACAGTGGACCAGTATGGCATGCTGTATAAGGTGGCTGTGCCGCCTGCCACCTTTTCACCAACTGGACTCCCATCTGTGGTGAATATGAGTCCCTTGCCCCCAACGTTTAATGTAGCGTCTTCACTAATTCAACATCCAGGCATCCACTATCCTCCACTCCACTATGCTCAGCTCCCATCCACCTCGCTGCAGTTCATTGGGTCTCCTTATAGCCTTCCCTATGCTGTGCCACCTAATTTCCTACCGAGTCCCCTCCTATCTCCTTCTGCCAACCTTGCCACCTCTCACCTTCCACACTTTGTGCCATATGCCTCACTTCTGGCTGAAGGAGCCACTCCTCCCCCACAGGCTCCCTCCCCGGCCCACTCATTTAACAAAGCTCCCTCTGCCACCTCCCCATCTGGGCAATTGCCACATCATTCAAGTACTCAGCCGCTGGACCTTGCTCCAGGTCGGATGCCCATTTATTATCAGATGTCCAGGCTACCTGCTGGGTATACTTTGCATGAAACCCCTCCAGCAGGTGCCAGCCCAGTTCTTACCCCTCAGGAGAGCCAGTCTGCTCTGGAAGCAGCTGCTGCAAATGGAGGACAGAGACCACGAGAGCGAAATTTAGTAAGACGGGAAAGTGAAGCCCTTGACTCCCCCAACAGCAAGGGTGAAGGCCAGGGACTGGTGCCAGTGGTAGAATGTGTGGTGGATGGACAGTTGTTTTCAGGTTCTCAGACTCCACGGGTAGAGGTAGCAGCACCAGCACACCGGGGGACCCCGGACACTGACCTTGAGGTCCAGCGGGTGGTTGGCGCTTTAGCTTCTCAGGACTATCGTGTGGTGGCAGCTCAGAGGAAGGAGGAACCCAGCCCCCTCAACCTATCCCATCATACCCCCGACCATCAGGGTGAGGGGCGAGGGTCAGCCAGGAACCCTGCAGAGCTGGCAGAGAAAAGTCAGGCCCGTGGGTTCTACCCTCAGTCCCATCAGGAACCAGTAAAACATAGACCTTTACCCAAAGCAATGGTTGTAGCCAATGGCAACCTGGTGCCCACTGGAACTGACTCAGGCCTGCTGCCTGTGGGCTCGGAGATCCTGGTAGCATCAAGTCTGGACGTGCAGGCCAGAGCCACCTTCCCAGACAAGGAGCCAACGCCGCCCCCCATTACCTCCTCTCACTTGCCTTCCCATTTCATGAAAGGCGCCATCATCCAGCTGGCTACGGGAGAGCTGAAGCGGGTGGAGGACCTCCAGACCCAGGATTTTGTGCGCAGTGCCGAAGTGAGCGGGGGGCTGAAGATTGACTCTAGCACGGTCGTGGACATTCAGGAGAGCCAATGGCCTGGATTTGTCATGCTGCATTTTGTGGTTGGTGAGCAGCAGAGCAAAGTGAGCATCGAAGTGCCCCCCGAGCACCCCTTCTTTGTATATGGCCAGGGTTGGTCCTCTTGCAGCCCTGGGCGGACGACACAACTCTTCTCTCTGCCCTGCCATCGGCTACAGGTGGGAGATGTCTGCATCTCTATCAGTTTACAGAGCTTGAACAGTAACTCAGTTTCTCAGGCCAGCTGTGCTCCCCCAAGCCAGCTGGGTCCCCCCCGAGAAAGGCCTGAGAGGACGGTCTTGGGATCCAGAGAGCTATGTGACAGTGAGGGGAAGAGCCAGCCGGCAGGAGAGGGCTCCCGTGTGGTAGAGCCTTCCCAGCCTGAGTCCGGTGCTCAGGCCTGCTGGCCAGCCCCGAGCTTCCAAAGATACAGCATGCAAGGGGAGGAGGCACGGGCTGCGCTGCTCCGTCCCTCTTTCATTCCACAGGAGGTAAAGCTGTCCATTGAAGGGCGTTCCAATGCGGGAAAATGAACCTCTTCCCCAGACCAGGACTGGGGCTTTACCCCAGAGCCTCGCCTCGCCGCCGTGAGCAGGCAGAGGATTTGCACACGCCGAGCAGGGAATGGCTTTCTTGGCAGTGAGATTTGGGGGAAAGGGGAGGCATGAAGTCAGCCTCCCAAGGCAGGATCTGTTGTTCATTACCCCATGGCATCCTTTCAGGACAACCCCAGAGGGTGTTGTGATGGGGAGCAGCAGGCCTGGGGCAAGGAAGGAAGGGGGTGCACACAGGAGAAGAAACATTCCAAAATCAGGGCCTCCCTGTTCTTTCCTCCCCATCCCTAGCTCCTGCAAGAGAAAGTCCAGGCTTTGGGAGCAGATGGCAGAGGGAGGGAGTAAAGAAAGAGCCAAAAATGATGATCCACAGCTTATAGTAGCAGTTAAACTGTCAGAAGTTTTTTTTCTTTTTTGTGGTAGAAGGGCAGGAGGCCCCAAGGTTGGAAATAAGAGGGTTCCCACCCAGAACCCTTCTTGTGAGAGATGCGCACTTTAAAGGGTGATTTTGTTCCAGATGTCTATGGCTGGGTGTGTGGGGGAGGAGCACTCTCATCTGCAGGACTCTGCTTGATCCTCTGCTTCATAGCCCTTCCCCATCTCTCCTCACCATTCTGCCTACAAGGCTTCTAGCAGCACGGGGGCCCGGAGGGAGAGCCCCTTCAGGGTTCAGAGTGAAGTACTACCTTGCCAGGGACTCAGTCAGGGGACTTTGGGAGAAAGACTTGATAGCCAGGCTGACTGGGTTCTAGGCAGGCCCTCTGGAAAGGTAGCTCACCTAACAAAGCTCCTCCATCTCAGCATGCCAGACCCACTTTGAAATCTCACAGAATCTTGCTGGTAATGGTGACTTTAGAACTAGTAGACCCTTTTTCCCAGGCACTGACCCCCCACCTTTGTCTGTGTTGTGCCCAAGTGCCTGCGCCACCCCCACCCTCCTGCTGCGCTGACCGCTGCATGGTGTCGTGACCTGGGCCTCATTTGTAGCTGCACTGCCTTTCCTTGTCTGCAAAGTTGGTTTTGTCCACTCTGACCAAGACCTCTAGTTTTTGGTGGGTAGGGGGTCTCTCTGGTTTCCCCTTCAGCTATAATCTCTATTTTTAAAATCTCAAAATCATGTCCCCTCCACTTCCACTGCCAAACAGCTTGGTGAAGAAACAAGAAGGGAACTATGCCCTGGGCCAGGGCGAATGCGTGGCTGGGCAGTGCCCATCATGGCATTTTCACATGTCCCATATGCCCCTCCTGTCTTATTCCACTGCTTCTCCCAGCATTCTGGTGCCTCCAAGCCATCCCCTCCCACCACCAGCTCTAAGATTCTAGGATAGTCTTGATAACATTTCAGTACCTGAATAGATGTCATTTTGTGTTGGTATATTCCTCTGCAAAAAGTATTTTCAATCTTGGTTGCATTGGCACCCCCCCTACCCCCCACCAATGTCTTAATCCCACATTTTCTTCACAACTTTTAGCATCAGCTCAGACCGTGGGGTTCCACTGGGTATTGGGAATTAGGCTCCCCCACTAGCTTTCAGGTGGGTAAGTTTTTTTGTTTGTTTTTTGGGGGTCTTTAGACTCTTGAAGGCAACTCAGGGTATTGTCCACGCAGCTCTCTGGTTAGACTTCTCCCAGGCTATGATCCTGGCATGTCCTTTATAAGGTATACTTGGATTGGCCgagacctggcctggcatcaggagtccaaacctctgaggtctgatctctgctctgtcaaggactttcggcaagtctcgtgacctctggctctttcacttcctccccacctgccaaatggggataaataatcttacctacctcctggggGGAGGGGAAGTTCTGAGAATGGAGTCATTCTTAGTGTTCAGGTGCTAAAGGTTGTTCTCCTGGGGGAACAGAGTGACTGAAACTGGCTTGTTTGCTACAAGCCCTACCCTCCACTCTTTCATTCCTTGAAAGCAGTTTGCCTGGTCAGTCAGCTTTTGGGGGTCCATCAAAGGAGGTTGCTGACCTGACCGTGAGTGCTTCAGTATCTGGTTTGTGTCAGAACCAGACGCCAACTTTGTACTGCATTTGGGATCATATCTTTCCCCTTCTCTGTCCCCCATTCTCTGAATGCTGCTTTCTCTGGCTTGTTTCCTACAGTGGGGGCCTGTGGGGTTGAGTCTTGAGGAATCCCCTCAAATGAGAAGGCCTTGGGAGAAGGCCTCATCTCTGGCTGTTTCATGAGCAACTCATTCCTAGAGTTCATTGTTTGCATGGGTTTCTCACAAGCGTCCTTCCTCATAGGAAGGCTCATCAACTGAATTTAGTGACATGTACACAGTAGATGCTCAAGCAGTGTCTGCAAGGACACAAGCTGAGCTTTCTCCTTATGGGGCAAACCTATGTCTAACCAGATACAGACCAATTAGTTTAGATCAAATCACCTTCCACTTGGGCTACTTGTGACTTTCCAACCTGGTAACTTCCACTGAATTCTGGAAAGAGAAATTCTTGAGGACCCTGGCAAGTTGGGCCCTGACCTTTCTGTTGCTGTCTCTTGCTGGTGAAGCAATACCAGCAGTTCCTGTAATACCACAATATCGTTCCATGCATATATAACATATTAATACTTGATTTTGCTGAGCTGCAAAGGTATCTGTCATAAAATATGGTCCCCAGGAAAAGAATCTCTGTGCTCTAAATCTCGGTCAGAGCTGTGGCCTCCCCCTTGCCTTTAACCTCTAGTTTAGTCTTTTCCTCCAGGCATGAAAAATATGACTAACCTGTGGTGTGTCCATTCTTCCTTATAGGAATTTCCTGAGTTTGCAGGAGACATGAGAGCAGTTTTTAGCGAGTATTTTAGTGGGAAGTTGCCAACTTTTTAAGAATGAGCAGTTGACAAGGGCCAGAGCCTGTCCCTTGTCAGCAGTAGGACATTTCCAGCTCTTAGGAATAGAAAGGAGGACTGCTGACTGTCTGGCGCTGTATAAAAATGTGTATACCAATTTGGGAATAGGGGAACCCAGTCATGGATGGATAATAAGCCAAGTCTTGAATCATTCCTATCAAGATTAGTATACATGAGGAAGAGGTGGCATGGGGGGAAGGGGCTCTGGGAGTTCAGAGCTGAGTACTTGTACCTGAGGGAGGGCCCCCAGCCAATCTGGGCTGGTCCTTCTATATTCTTGGTCCCAGTTGGTCATAACACCAAGGGCTTTGCCCTGCGCTGCTTTGCCACTGCTGCTGTCCGCTCACTGTCCTGCCTGCTGTCCTCTACAGCTCCCTATCCTTCCATGTCTTTGGCCATGTAGATTAAGTGTAGGCGTCCGGTTCATTCTTACCTGTGTTAGGCCATGTTATTTTATAGCGAAGTCATGTTCGATAGGGATGGTATGAAATGCTGCTGGTGGGCTGGTAAATCCAAAGGGATAAGGCTTCAGTGCTGTTGGGAGCCCTCTGGCTCCAAATGTCTGACTATCTTGAGGGAGAAACAAGCAGGTTTCTACTAGTGGTGTCTTCTGTTGTATTAACTTCTTTCCTTTGTGGTATCTTGTATCCTGTTTTAAAAACTAAATGAAGGGAACCACATTAGGGCCCATGCCAGCATCCCAGTGAAGTTCGTCCAGCTCCAGTTAGGTGGATTCTGGAGTTCGGAGAGGGTTTAAAGTTTGGCTGAAATAGCACCTCAAGTGGGGTTTAGTTTTATTTTTACCTGCGGGCATCATGGGCGATTTAGGGGGAAGCACAGGATGGTGGTGTGGTTTAAACCTGCAGCAAGCAGGCATGTTGAAGAGTTGAGTGATCACGCTGGAGATGAAGGGTTGGACATGGATTGACTGGGAAAAGGCCTGGGTCCATTGGAGTAAAGATAACCTAGTCGATTGAATTGGCCATGGGAAGTTAGGTCACAGTCTTATAAACAAAGTAAATAGGACAGAGACTAAGTTTTAGGGAGACATCTTGGCCTCCTAGGCTAAGTTTACTAAACCACACTGAAGCTATAGTACCTTCCAGATGGGCAAAAGTGTACACTACAGTTGAGGAGCTGAACCTTATTAGGTTGGATGTCGATCAGGAACCTGTTTGCCCTTTGCTGGGAAGCCTTCACTCTCCAGCTTTCCTGGGGTAGGGAAGGTCTCCCACATTATGCAATAATAAAATAAGCATCTGGGTCTTTGCAGCTGTCAGTTGCTCTTTCAACTCTAGGATCCATCTTTGGACCAGAAGCCTGGTCTGTGCCTAGGATGACACTGGCCCCAGAGATGCTAGAGTCGACTGCACTCTCTCCTTAGCTGCAGACCATGCACAGTGCCTGGGGCGGAAGGAGGAGAGGTGTTGCGGTTTGCCCTGCTGCCTCCCCAGCAGGAACAATAGTCATAAATGCACTTTTCACACTAAAGGTTTCTTTATTAGTTCTCCAGTTAAACCTAGATCCCTCCCTGGTAGATTGCGAACTCAAAGTTTTGTGATCCCAAAGCCATTCCACTGCAAATGCCCAGCAGTGAAGATGGCCTCAAATTGGGTTCTTGCCTGCAGTGTGTGTGGCAGCAGCCCATGTGCCTTTACCTGTTGTCAAACTTGCAAGCATTTATTTGTCTTTATGACTGTCATGGGGACTGAGGTTCTTCAGAGAAAGAGTGTGAGCTGATGACACAGTGGTTTTACACCCACCCCCTGGGCAGGGAGTTTGCACGTAGTTGTGAGCTGTGAGTGGTTAGTGCATTGCTGGTATTGCTGAAGGCAGGGTTGATCCCTCACTTGACTGATACTTGCATTCAAGAGAATCTAGATTGTGTTGGGGGAGGGACTGACTGTACTCATGGCTAACTTAAAGTATTAAAATAAGGCTGTCCCCTACAACCTTCTTAGTCACACAGGATCCCTGTAGCCAAAACAGTATATGATCCAGCTGCAGAGAGCAGACTGCTCTCAGCTTGCACAGCACCTTAGGCGAGGGAAGAATATACGGATAGGGAATGGGGTGGAGAAAGGATGGGAATGTTGTCATCCAGGTGGCTTTAGGGTCCTAAGGAGTGGAGAAGGATGGCACTGGGGAGGTCTGGATGGATCTGTGTAGGAGTTCCCTGTAGATAAATTACTGATCCCCCATCTACTATCCCCAGTATGTAATGGCTGAATTAATATGTAATCAACTGCATTGTATCTAAAGCCTTAGAACTAGTCAGGTGCTCCCTCCACCCAATACCATTTCTTACCCTCTAATCCTACCTGATCTTTAACAAAGCATTAATAATTCTAAGGATAATCTCTATTTTGTTGTGCTTTTTTGTAACTGTTTTAAATAAATCAATTTGTACTGTATATTTGTACTTTTGTGAGATCCTTTTTGCTGTTTTACCATTTTAAGTCTCTGTACTTGGCTACACACAGATTGTATTTTTATTGTTAATGCTCTTCTTATGGATACCTGCATTTAACTTGTGGACTATGTAAACACAatatctatcaatatctatatatctatatatctatctatataAACTACTAGCTTTTC

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