Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name NIP7P1
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr10:93106582-93107289  UCSC
Coordinates (T2T) chr10:93986468-93987175  UCSC
Coordinates (hg19) chr10:94866339-94867046  UCSC
Strand -
Parental Sequence NM_016101.5
Parental seq. overlap 600 bp
Parental seq. overlap (%) 28.9%
Genomic Region Intergenic
Retrocopy Summary NIP7P1, located on chr10:93106582-93107289, is a retrocopy of the parental gene NIP7. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NIP7
Full Name nucleolar pre-rRNA processing protein NIP7
Also known as CGI-37|HSPC031|KD93
Coordinate chr16:69339772-69343106
Strand +
Gene summary Enables RNA binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Located in cytosol; nucleolus; and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NIP7P3
Bonobo Pan paniscus NIP7P3
Gorilla Gorilla gorilla NIP7P3
Gibbon Nomascus leucogenys NIP7P2
Rhesus Macaca mulatta NIP7P3
Baboon Papio anubis NIP7P4
Golden snub-nosed monkey Rhinopithecus roxellana NIP7P4
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NIP7P1
CTATGTGAGTGAGAAGATTCTGAAGTTGGCTGCCAGTATCTCCAGGGACAAGCTGGTGTTGCTGGGAACCTGCTTCGGAAAATTCACTAAGACCCACAGGTTTCAGTTGCACATCACAACTCTGGATTACCTTGTACCCTATACCAAGTATAAAGTGCGGATAAAGCCTAGAGCTTCTTCCTGGAGCAGGTCAGTCCTTCCCGTATGGGAACCATCTGTTGAAATATGGTCTGGGTTGAATCACCAAAAAGACTTCTCAGTACCAGGCAGTGGTGGTGTGCTCCATGGCAGACATTCCTTGGGTTTTGGGGTGGCAGGAAAATCTACACAAGACTGCAGAAAAGTGGACCTCCTGGTGACTGTGGTATTTCATCATGCAGACACTGGGAAATATGTGAGACATGAAATGACGTTGACTTAAAACGAAGTCAAGGCCTCACAGCTGTGTGGAAGGGCCAAGCTTTGTTCCCTGTATTTGTGCAGACTCCACTATCATGTTGAACTTTGTCAACACTGTGACCTCTTCAGGGACTCCTCTGTTTACTATTCTCTCTACCACTGACAGATGCAGGCTGGATTCTTACTGTACAGAAATGACTTTAAAATGGAGTTTCAGATCTTTGTGTTTGCACTAAATAGAATGTTTTGTTTTGTATTTGAATCAGGCGGCTTCTTGTTCTGAATAACAGGTTCAAAATCATTGGAACT
>NM_016101.5
GACTTCCGTTTCCAGTTACCAAGGCACGAGGATCCGGTGTTCCAACCCAGGGGGAAAAATGCGGCCTTTGACTGAAGAGGAGACCCGTGTCATGTTTGAGAAGATAGCGAAATACATTGGGGAGAATCTTCAACTGCTGGTGGACCGGCCCGATGGCACCTACTGTTTCCGTCTGCACAACGACCGGGTGTACTATGTGAGTGAGAAGATTATGAAGCTGGCCGCCAATATTTCCGGGGACAAGCTGGTGTCGCTGGGGACCTGCTTTGGAAAATTCACTAAAACCCACAAGTTTCGGTTGCACGTCACAGCTCTGGATTACCTTGCACCTTATGCCAAGTATAAAGTTTGGATAAAGCCTGGTGCAGAGCAGTCCTTCCTGTATGGGAACCATGTGTTGAAATCTGGTCTGGGTCGAATCACTGAAAATACTTCTCAGTACCAGGGCGTGGTGGTGTACTCCATGGCAGACATCCCTTTGGGTTTTGGGGTGGCAGCCAAATCTACACAAGACTGCAGAAAAGTAGACCCCATGGCGATTGTGGTATTTCATCAAGCAGACATTGGGGAATATGTGCGGCATGAAGAGACGTTGACTTAAAACGAAGCCATTCCAAGGACAGACGGCTGTATGGAAAGGCCGAGCTTTGTTTCCTGTGTTTGTGTGGACTCCACCATCATGTTGAATTTTGTCAACACTCTGGCCTCTTCAGGGACTTCTTATTTACTGTACTCTCTATCACTGACAAATGCAGGCTGGATTCTTATTATATACAGAGATGGCTCAAAAATGGGGTTTCAGATCTTTGTGACGAAATAGAATACTGTTTCATATTTGAATCAGAGGGCTTCTTGTTCTGAGAAATAGGTTCAAAATCATTGGAACCAGGAACAAGAATAGCTTATTGTTATCTGTGATAACACTGTTTTCTAAACACAAGGATTTTCTTTTTTATTAATATGCAACATAGACATTGCCATAACAGAATAATAAACCACATGTGGGGTTTTAAAAATGAAATTTGGCTAATAGGAGCAATTCAGCTATTTTTCTATACAGTAATTGGTGTGTGGTATAGAagaaaaacgggttcaaaccccacttctgccacctaccagctatatggccttgaatgagtcattcagctttaataaggttcattttcttctgtttaaaaAGACACAAAACTTGAAAATCAGCTTTGGCCATCTACCTGAGAATTAGAAAGTCTGATTTTTGGAATTAGAAATCATGATTGTAggctgggcacagtggctcgcgcctgtaatcccagcactttgggaggccaaggcggacggatcacttgaggttaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaaaaaaaaaaaaattaggtgtggtgacacatggctgtggtcctagttacttgggaggctgaggcaggagaatggcttgaactggggaagcagagcttgcagtgagccaagatggtgccattgcactccagcctgggcgtgacagagtgagactccatctGATTGTAAAGCATCTAGTACAGTGTACAGTGCCTTGGAAATGATAGGTATGGAATAAATGGTAATTATTTTTATATTATATATATTATGTATTCCTGTTATTAAGTGTAGAGTTTTATGAGTATAATTTGATTTTATTACCTTCTTTTTTACAAGCTGTTTTCTCAGTATTTTTCTTGGATGGGATGACGCTAGGCTGGAAAGTTTTTTTCATCACTATGATTTTATAAAACAATTTTTTCTATGAACCTTTACTTACTTGACTGGATTGGACTAAAAGCACTGATCAGAGGCCACGACATAAAAATTCAGTCCCTTTGTCCTTCCCCGTGCCTCCCAAAGTTACTTTAAGATCCTTAGAATATTTCTTTAAATATTTTATAGACAAAAAATTTAAAGACTATCTGTATTGCAAAATTAAACTATTTCTTTAATGAATATATTGCTTATTTTAAGTTCCAAAGGTGAAGTCTTTAAGAATAAAACATTACCAACTCCTGCTTTTATATGTAA

Publications

PMID - Link Title