Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name XRCC6P1
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Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr10:93206760-93209679  UCSC
Coordinates (T2T) chr10:94086743-94089652  UCSC
Coordinates (hg19) chr10:94966517-94969436  UCSC
Strand -
Parental Sequence NM_001469.5
Parental seq. overlap 946 bp
Parental seq. overlap (%) 28.5%
Genomic Region Intergenic
Retrocopy Summary XRCC6P1, located on chr10:93206760-93209679, is a retrocopy of the parental gene XRCC6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name XRCC6
Full Name X-ray repair cross complementing 6
Also known as CTC75|CTCBF|G22P1|KU70|ML8|TLAA
Coordinate chr22:41621295-41664041
Strand +
Gene summary The p70/p80 autoantigen is a nuclear complex consisting of two subunits with molecular masses of approximately 70 and 80 kDa. The complex functions as a single-stranded DNA-dependent ATP-dependent helicase. The complex may be involved in the repair of nonhomologous DNA ends such as that required for double-strand break repair, transposition, and V(D)J recombination. High levels of autoantibodies to p70 and p80 have been found in some patients with systemic lupus erythematosus. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes XRCC6P3
Bonobo Pan paniscus XRCC6P3
Orangutan Pongo abelii XRCC6P4
Baboon Papio anubis XRCC6P4
Golden snub-nosed monkey Rhinopithecus roxellana XRCC6P6
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Adipose SubcutaneousMuscle SkeletalArtery TibialArtery CoronaryHeart Atrial AppendageAdipose VisceralUterusVaginaBreast Mammary TissueSkin Not Sun ExposedMinor Salivary GlandBrain CortexAdrenal GlandThyroidLungSpleenPancreasEsophagus MuscularisEsophagus MucosaEsophagus Gastroesophageal JunctionStomachColon SigmoidSmall Intestine Terminal IleumColon TransverseProstateTestisNerve TibialSkin Sun ExposedHeart Left VentricleBrain CerebellumWhole BloodArtery AortaPituitaryBrain Frontal CortexBrain CaudateBrain Nucleus AccumbensBrain PutamenBrain HypothalamusBrain Spinal CordBrain HippocampusBrain Anterior Cingulate CortexOvaryBrain Cerebellar HemisphereLiverBrain Substantia NigraKidney CortexBrain AmygdalaCervix EctocervixFallopian TubeCervix EndocervixBladderKidney Medulla00.51
log10(TPM+1)

Related Sequence

>XRCC6P1
GAATATGCCCTTTACTGAAAAGGTCATGGCAACTCCAGAGTAGATGGACAAGATGAAGGCTATCATTCAGAAGCTCCGCTTCACATACAGAAGTGACAGCTTTGAGAATCCCGTGCTGCAGCAGTAAGTACTTCAGGAACCTGGAGGCCTTGGCCTTGGATTTGATGGAGCCTGAACAAGCAGTAGATCTGACATTGCCCAAGGTTGAAGCAATGAATAAAAGACTGGGATCCCTGGTGGATGAGTTTAAGGAGCTTGTCTACCCGCCAGATTACAATCCTGAAGGGAAAGTTACCAAGAGAAAGCACAATAACGAAGGTTCTGGGAGCAAAAGGCCCAAGGTGGAGTATTGAGAAGAGAAGCTGAAGACCCACATCAGCAAGGTCATGCTGGGCAAGTTCACTGTGCCCATGCTGAAAGAGGCCTGCCGGGTGGATGGGCTGAAGAGTGTGCTAAAGAAGCAGGACCTGCTGAAAGCCCTCACCACGCACTTCCAGGACTGACCAGAGGCCGCGCGTGCAGCCGCCCTTCCACACCATTCCCAGGCTGCCTGGCCTTGTTCTCAGCCAGTTAAAATGTGTTTCTTCTGAGCTAGGAAGGAACAAAGACCCGGACATTTAACACAAATACATGCAGTGTGCTTCTGCCTAGTGATACCAAGAGGTCTCAGATCTTTGGAAGTCATCAGATTATACTGGAAAAAGAGGAAACAGAAGAGCTAAAATGGTTTAATGATCCAGGTTTGATGCTCCTGGGTTTCAAGCCCTTGGTAATGCTGAAGAAGCACCATTACCTGAGGCCCTCCCTGTTGGTGTACCCTGAGGAGTCGCTGGTGATTGGGAGCTCAATCCTGTTCAGTGCTCTGCTCATCAAGTGTCTGGAGAAGGAGGTCATAGCATTGTGCAGATACACGCCCCACAGGAACATTCCCCCTTATTTTGTGGCTTTGGTGCCACAGGAAGAGGAGTTGGATGACTAGAAAATTCAGGTGACTCCTCCAGGTTTCCAGCTGGTCTTTTTACCCTTTGCTGATGATAAAATGAAGGTGTCCTTCCTTGAAGCAAGTGGAGACTATAAATATTCAGGAAGACATAGTTTGATTTTTTTGGTTGATGCCTCCAGGGCTATGTTTGAATCTCAGAGTGAAGTTTTGATTCCTTTTGACATGAGCATCCAGTGTATCCAAAGTGTGTACATCAGTAAGATCATAAGCAGTAAGAAAGATCATAAGCAGTAAGATTATAAGCAGTAAGAAAGATCATAAGTAGTGAGATCATAAGCAGTGAGATCATAAGCAGTAAGATCATAAACAGATCATAAGCAGTGAGATCATAAGCAGTGAGATCATAAGCAGTGAGATCATAAACAGATCATAAGCAGTGAGATCATAAGCAGTGAGGTCATAAACAGTGAGATCATAAGCAGTGAGATCATAAACAGATCATAAGCAATGAGATCATAAGCAGTGATTGAGATCTCTTGGCAGTGGTGTTCTATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAAAAATATTTACGTCTTACAGGAGTTGGATAATCCAAGTGCAAAACAAATTCTAGAGCTTGACCAGTTTAAGGGGCAGCAGGGACAAAAACGTTTCCAAGACCTGATGGGCCACGGATCTGACTACTCGCTCAGTGAAGTGCTGTGGGTCTGTGCCAGCCTCTTTAGTGATGTCTGGTTGAAGATGAGTCATACGAGGATCATGCTGTTGACCAGTGAAGAAAACCCCCATGGCAATGACAGTGCCAAAGCCAGCCAGGCCAGGACTGAAGCCGGTGATCTCCAAGATACAGGCATCTTCCTTGACTTGATGCACCTGAAGAAACCTGGGGGCTTTGACCTATCCTTGTTCTATAGAGATACCATCAACATAGCCGAGGATGAGGACCTCAGGGTTCACTTTGAGGAATCCAGCAAGCTAGAAGACCTGTTGCCGAAGGTTCACGCCAAGGACACCAGGAAGCAAGCACTCAGCAGGTTAAAGCTGAAGCTCAACAAAGATATAGTGATCTCTGTGGGCATTTGTAATCTGGTCCAAAAGGCTCTTAAGCCTCCTCCAGTAAAGCTCTATCAGGAAACAAATGAACCAGTGAAAACCAAGACCCTGTCTTCTGTCCAAGTTGGTCACTTCCCTGCGCCAAAGTGAACAGTAGCCAACATGTCAGGGTGGGAGTTGTATTACAAAATCGAGGGCg
>NM_001469.5
ATGCGTGGATTGTCGTCTTCTGTCCAAGTTGGTCGCTTCCCTGCGCCAAAGTGAGCAGTAGCCAACATGTCAGGGTGGGAGTCATATTACAAAACCGAGGGCgatgaagaagcagaggaagaacaagaagagaaCCTTGAAGCAAGTGGAGACTATAAATATTCAGGAAGAGATAGTTTGATTTTTTTGGTTGATGCCTCCAAGGCTATGTTTGAATCTCAGAGTGAAGATGAGTTGACACCTTTTGACATGAGCATCCAGTGTATCCAAAGTGTGTACATCAGTAAGATCATAAGCAGTGATCGAGATCTCTTGGCTGTGGTGTTCTATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAAAAATATTTACGTCTTACAGGAGCTGGATAATCCAGGTGCAAAACGAATTCTAGAGCTTGACCAGTTTAAGGGGCAGCAGGGACAAAAACGTTTCCAAGACATGATGGGCCACGGATCTGACTACTCACTCAGTGAAGTGCTGTGGGTCTGTGCCAACCTCTTTAGTGATGTCCAATTCAAGATGAGTCATAAGAGGATCATGCTGTTCACCAATGAAGACAACCCCCATGGCAATGACAGTGCCAAAGCCAGCCGGGCCAGGACCAAAGCCGGTGATCTCCGAGATACAGGCATCTTCCTTGACTTGATGCACCTGAAGAAACCTGGGGGCTTTGACATATCCTTGTTCTACAGAGATATCATCAGCATAGCAGAGGATGAGGACCTCAGGGTTCACTTTGAGGAATCCAGCAAGCTAGAAGACCTGTTGCGGAAGGTTCGCGCCAAGGAGACCAGGAAGCGAGCACTCAGCAGGTTAAAGCTGAAGCTCAACAAAGATATAGTGATCTCTGTGGGCATTTATAATCTGGTCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGGGAAACAAATGAACCAGTGAAAACCAAGACCCGGACCTTTAATACAAGTACAGGCGGTTTGCTTCTGCCTAGCGATACCAAGAGGTCTCAGATCTATGGGAGTCGTCAGATTATACTGGAGAAAGAGGAAACAGAAGAGCTAAAACGGTTTGATGATCCAGGTTTGATGCTCATGGGTTTCAAGCCGTTGGTACTGCTGAAGAAACACCATTACCTGAGGCCCTCCCTGTTCGTGTACCCAGAGGAGTCGCTGGTGATTGGGAGCTCAACCCTGTTCAGTGCTCTGCTCATCAAGTGTCTGGAGAAGGAGGTTGCAGCATTGTGCAGATACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTGGTGCCACAGGAAGAAGAGTTGGATGACCAGAAAATTCAGGTGACTCCTCCAGGCTTCCAGCTGGTCTTTTTACCCTTTGCTGATGATAAAAGGAAGATGCCCTTTACTGAAAAAATCATGGCAACTCCAGAGCAGGTGGGCAAGATGAAGGCTATCGTTGAGAAGCTTCGCTTCACATACAGAAGTGACAGCTTTGAGAACCCCGTGCTGCAGCAGCACTTCAGGAACCTGGAGGCCTTGGCCTTGGATTTGATGGAGCCGGAACAAGCAGTGGACCTGACATTGCCCAAGGTTGAAGCAATGAATAAAAGACTGGGCTCCTTGGTGGATGAGTTTAAGGAGCTTGTTTACCCACCAGATTACAATCCTGAAGGGAAAGTTACCAAGAGAAAACACGATAATGAAGGTTCTGGAAGCAAAAGGCCCAAGGTGGAGTATTCAGAAGAGGAGCTGAAGACCCACATCAGCAAGGGTACGCTGGGCAAGTTCACTGTGCCCATGCTGAAAGAGGCCTGCCGGGCTTACGGGCTGAAGAGTGGGCTGAAGAAGCAGGAGCTGCTGGAAGCCCTCACCAAGCACTTCCAGGACTGACCAGAGGCCGCGCGTCCAGCTGCCCTTCCGCAGTGTGGCCAGGCTGCCTGGCCTTGTCCTCAGCCAGTTAAAATGTGTTTCTCCTGAGCTAGGAAGAGTCTACCCGACATAAGTCGAGGGACTTTATGTTTTTGAGGCTTTCTGTTGCCATGGTGATGGTGTAGCCCTCCCACTTTGCTGTTCCTTACTTTACTGCCTGAATAAAGAGCCCTAAGTTTGTACTATA

Publications

PMID - Link Title
No publications available for this retrocopy