Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name MATR3P2
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:105889534-105891469  UCSC
Coordinates (T2T) chr1:105925572-105927507  UCSC
Coordinates (hg19) chr1:106432156-106434091  UCSC
Strand -
Parental Sequence NM_199189.3
Parental seq. overlap 1638 bp
Parental seq. overlap (%) 30.2%
Genomic Region Intergenic
Retrocopy Summary MATR3P2, located on chr1:105889534-105891469, is a retrocopy of the parental gene MATR3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MATR3
Full Name matrin 3
Also known as ALS21|MPD2|VCPDM
Coordinate chr5:139274101-139331677
Strand +
Gene summary This gene encodes a nuclear matrix protein, which is proposed to stabilize certain messenger RNA species. Mutations of this gene are associated with distal myopathy 2, which often includes vocal cord and pharyngeal weakness. Alternatively spliced transcript variants, including read-through transcripts composed of the upstream small nucleolar RNA host gene 4 (non-protein coding) and matrin 3 gene sequence, have been identified. Pseudogenes of this gene are located on chromosomes 1 and X. [provided by RefSeq, Aug 2013]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes MATR3P1
Bonobo Pan paniscus MATR3P1
Gorilla Gorilla gorilla MATR3P1
Orangutan Pongo abelii MATR3P1
Gibbon Nomascus leucogenys MATR3P2
Green monkey Chlorocebus sabaeus MATR3P1
Crab-eating macaque Macaca fascicularis MATR3P1
Rhesus Macaca mulatta MATR3P1
Baboon Papio anubis MATR3P1
Golden snub-nosed monkey Rhinopithecus roxellana MATR3P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MATR3P2
CTGCTAGAAAGTGGCAGTTCAGTGGGAGACGAGACTGATCTTGCTAATTTAGGTGATATGGCTTCCGATGGAGAAAAGGAACCTTCAGGTACTGTGAAAAACGATGCAAGTGCTTCAGCAGCAGCAAAGAAAAAGCTTAAAAAGCGTCGTTTCCCAGGGAGTATGGAAGGTTTTCTCACTCTAGATGAGGTTGGTGATGAGAAAGATTTGGAACTTCAGGAACTTCGTAAATCGGGCATGGCATTTAAATCTGGTGACAGAAATGATGATGGTTTGGTTGAAATTAAAGTGGACAAGATGGAGGAATTTAATCAAGAAAACGAAGCAGCATTGGAAAATGGAATTAAAAATGTGGAAAACACAGAACCAGGTACTGAATCTGCTGAGAATGCTGATGATCCCAACAAAGATACAACTGAAAACGCAGATGGTCAAAGTGATGAGAACAAGGAGGACTATACAATCCCAGAAGAGTATAGAATTGGACCATATCAGCCCAATATTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGATCACTCTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGTATCAGCCTTCCTCATTATCAGAAATTAAAGAAATTTCTGAATAAATTTGCAGACAAACGCAGACAGAAGGGAACTTAAGATATGTAAGAAGATTTAATGATTTCAAAGAAAATAATGGTCCTTTGTTTTTAATGTTAACCTTTCTTAAATACAATACTGATAGTTAGAAGAAAACTATTGTACTCTTTTGTTTTAGTGGAGAAATAATAGATGTCTGTTCATGTGTTCAGTGTTACAGCAAAAAAAAAATACACATATGGTTAAGTTAATGAATAGTTTTTGTTTTATCAGAATGGCAACAGACATAAGTAATTTGTAGAGATTGACTTCCTAAGCTACTTAAGACAACTTGCACCACTAAGAAAAAAATGTAGAACCATTTGGAAAAATGAAATGTAGTAGTTCCAAGTTTCAAAGAAATGTCAACATTTTATTCCATTCAATAAATAACAAAACCAATAGTATTTTCATTACTTTCATCTGAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCATTTGGAGTTTGAACCTGTTTTGGTTGCATTTCATTTTTGGGGAACTTCATTAATGTGAGATTGGCAATGCAAATGCAGGTGCAGTTTTCTGTTAATGTTAATTCTGTTGTTTAGGTAATAAGAAATATTAAGTAATTGGCTTTAGAATTTGTAATCTTTCCCCTGAGTTCCTGCTAGATTTCATATTCTAGTAGTCAATGTATTTTCAGTGAAATGTAAAAATATTCCCATTCTCTTTGACCAGTATTAATTTTTGAGATCTTATTGCTTGTCACTTGAACCCTGTAATTGTCACACATCTCTGGTATAAGCAACATTTGATTTTTGAAGTGTGTAGACCATCTTTTCATATTTTCAAGATGTAATTTTACATTTCTGCATTTTAAAAACATTTTGGCCATAATCCTAGATGCATGCTTCTATTTCATGTACCTGCACATGTGACCTTTGTGAACAGAAATTTGCATGTATAATTTGTGTTTGCTTGTAACTTTCTGGTTATATACTGCTTACATCTGTGGATTCAAGTTACTGAAGTGAATACCAGTAAAAAGAAAACCTTAGGCCATCTTCATTGGTTATACATGTTTGGAATGTTAACCAAACTCCAGACAGCAAAGAATCTCCAAGTGACAAGAAATCCAAGATGGTTCCCAGAAGACTGAAAGTTCAACCGAAGATAAAGAACGAGAAGAGAAGTCCGGTGAAGATGGTGAGAAAGACACAAAGGATGACCAGACAGAGCAGGAACCGAATATGCTTCTTGAATCTGAAGATGAGTTACTTGTAGATGAa
>NM_199189.3
CCCTTTCCCCTCCGGCCTCTGCCGGTGCTGCTGCGCCCTGCGGAGCTCCGAACACGTGCGCAGAGGCTGGCTGTGGCAGATGCAACTGCAGGATGACTTGAAAGTAGGGCATCCTTCACCCATCTGAAGGGAGGAAATAGTGGCAGGTGACAGTCTGCATGTGCAGTTTTCAGATGCCTTCACCTGAATGACATCTACCTCCATCAGGACCCCAGATGTCTGACAGCCCTGTGTGACACCAAGATAAGTAACAGTTGTCTGCTGGTTCTCAGCTTGAAGAAGATTCTGCAGTCCTTATTGATCCTTTTTCTTGGCGTTACCATTTTTGAAGCAAAGTTAACCTAGCTTTCTAGTTTGAGCTTTCTTTTTGGCCGTCTTTAAAAAAATTTTTTTTTTTAATCTATAAAATAGACAAGAGCTAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTCAGTAGGGACTCACAGGGTCATGGGCGTGACCTGTCTGCGGCAGGAATAGGCCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTAGTTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCTGCTAGTACTTCTTCCCATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTTTATCTTCTCAACACCGTGGAGATGCAGACCAGGCCAGTAACATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTACTCCTGAGAATTTGCCCCAAATCCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACCTTGAGTTATGGTAGAGATGGCAGATCTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCACTTTAGAAGAGATAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAATCTGGTTATTATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCGCATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGGACGTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGAGAAAAAGAGAGGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCTCTATATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATACAGGACACACAATGGGTGATCCATTCATGTTGCAGCAGTCTACAAATCCAGCACCAGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGGGACCAGCAGTTGGACCAAGAGGAAATCTGGGTGCTGGAAATGGAAACCTGCAAGGACCTAGACACATGCAGAAAGGCAGAGTGGAAACTAGCAGAGTTGTTCACATCATGGATTTTCAACGAGGGAAAAACTTGAGATACCAGCTATTACAGCTGGTAGAACCATTTGGAGTCATTTCAAATCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAATGGCAACCACAGAGGATGCTCAGGCCGCAGTGGATTATTACACAACCACACCAGCGTTAGTATTTGGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAAAAGAATAAAGAAACCTGAAGGAAAGCCAGATCAGAAGTTTGATCAAAAGCAAGAGCTTGGACGTGTGATACATCTCAGCAATTTGCCGCATTCTGGCTATTCTGATAGTGCTGTTCTCAAGCTTGCTGAGCCTTATGGGAAAATAAAGAATTACATATTGATGAGGATGAAAAGTCAGGCTTTTATTGAGATGGAGACAAGAGAAGATGCAATGGCAATGGTTGACCATTGTTTGAAAAAAGCCCTTTGGTTTCAGGGGAGATGTGTGAAGGTTGACCTGTCTGAGAAATATAAAAAACTGGTTCTGAGGATTCCAAACAGAGGCATTGATTTACTGAAAAAAGATAAATCCCGAAAAAGATCTTACTCTCCAGATGGCAAAGAATCTCCAAGTGATAAGAAATCCAAAACTGATGGTTCCCAGAAGACTGAGAGTTCAACCGAAGGTAAAGAACAAGAAGAGAAGTCCGGTGAAGATGGTGAGAAAGACACAAAGGATGACCAGACAGAGCAGGAACCTAATATGCTTCTTGAATCTGAAGATGAGCTACTTGTAGATGAAGAAGAAGCAGCAGCACTGCTAGAAAGTGGCAGTTCAGTGGGAGACGAGACCGATCTTGCTAATTTAGGTGATGTGGCTTCTGATGGGAAAAAGGAACCATCAGATAAAGCTGTGAAAAAAGATGGAAGTGCTTCAGCAGCAGCAAAGAAAAAGCTTAAAAAGGTGGACAAGATCGAGGAACTTGATCAAGAAAACGAAGCAGCGTTGGAAAATGGAATTAAAAATGAGGAAAACACAGAACCAGGTGCTGAATCTTCTGAGAACGCTGATGATCCCAACAAAGATACAAGTGAAAACGCAGATGGTCAAAGTGATGAGAACAAGGACGACTATACAATCCCAGATGAGTATAGAATTGGACCATATCAGCCCAATGTTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAAATTTCTGAATAAATTGGCAGAAGAACGCAGACAGAAGAAGGAAACTTAAGATGTGCAAGGAGATTTAATGATTTCAAAGAAAATAATGGTTCTTTGTTTTTAATGTTAACCTTTTTTAAATACAATACTGATAGTTAGAAGAAAACTATTGTACTCTTTTGTTTTAGTGGAGAAATAATAGATGTCTGTTCATGTGTTAAGTGTTATAGCAAAAAAAATACACATATGGTTAAGTTAATGAATAGTTTTTGTTTTATCAGAATGGCAACAGACAGAAGTACTTTGTAGAGATTGACTTCCTAAGCTACTTAAGACAACTTGCACCACTAAGAAAAAAATGTAGAACCATTTGGAAAAATGAAATTTAGTAGTTCCAAGTTTCAAAGAAATGTCAACATTTTATTCCATTCAATAAAGAACAAAACCAATAGTGTTTTTATTACTTTCATCTGAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCATTTGGAGTTTGAACCCGTTTTGGTTGCATTTCATTTTTGGAGAACTTAATTAACGTGAGATTGGCAATTGAAATGCAGGTGCAGTTTTCTGTTAATGTCATGCTGTTGTTTAGGTAATAAGAAATATTAAGTAATTGGCTTTAGATTTTGTAATTTTTTTCCCTGAGTTCCTGCTAGATTTCGTATTCTAGTAGTCAATGTATTTTCAGTGAAATGCAAAAATATTCCCGTTATCTTTGACCAGTATTAATTTTTGAGATCTTACTGCTTGTCACTTGAATCCCGTGATTGTCATACATCTCTGGTATAAGCAACATTTGATTTTTGAAGTGTGTAGACCATCTCTTCATATTTTCAAGATGTAATTTTACATTTCTGCATTTTTAAAACAGTTTGGCCATAATCCTAGATGCACGCTTCTAATTCATGTACCTGCACATGTGACCTTTGTGAACAGAAATTTGCATGTATAATTTGTGTTTACTTGTAACTTTCTGGTTATATACTGCTTATATCTGTGGATTCAAGTTACTGAAGTGAATACCAATAAAAAGAAAACCCTAGGCCATGTTAATTGGTTATACATGTTTGGAATGTTAACCAACGTATTTGTCAGTTGTGGTTTTTATTCGCTCTTAAACTTTGTGCATGCTTTAACAATTTATTACTTTTAAATCTAGAGTGAATTCTAAAGACTGCCGCTAAAGATCTGAGTTTTAAAAATGTTGTTGCTGGTGGATTTCTTGTTCCTGTTACATAACTAAAAGTGAGGCCATTTGTGGTTTTTAAAAACCTTATGAATTAAAAATGCTACAGGTGAACAAACAGAAGCTTATGTTTAGAGATATTGATGACTTAACAGTACAATTGGAAGTAATACGGATGAGCAAGAATTAGTTCTGCAGCTTTTCAAAATAATTACGTAGAGACTCTTGGTATATTGGATTATCTGTTGTAAACAAtttttttttcttccctgacacagggtctcactctgtcacccagactggagtgcagtggcacagttctctgcaacctcagcctttgggctcaaatgaccctcctacctcagtctcctgagtagctgggactacaggctcatgccactatacctggctagtttttggtttttttgtatagatggggctttgccatgttgcccaggttgatcttgaattcctgggcccaagtgatctgctcgcttcagcctcccaaagtgctgggactgtaggcatgagccaccatccctggccAAGAAACAAAGTTTTAATTTCAAAAAAATCTACAAAAACAGGATAGGCATTGTCTTTCAAATGTTCAGACCCCAGTTTATTAAAGGATACTTCAAATAGTTGGCTAAATTTTATGATCTCTCCCGTTGAAAAGTAGGTGATGATTTTAATGTGACATGCACAAAAAATCCTTGCCAGTTTACTTCTGCAATTTAATTTTAGCCTTTACTAATTACCCACTTCTGTTTAATTCCAATTTTTAACAGCAGGTACATAAAGCATTATGTGCACAATGGAGTTCTTCAGTGTTTCCTTTCAGTGATGGCTTTTTCATAGCTTCAACTTTGTTGGATTTAGCAAGTTGAAGGAAAGAATGCTATGTTTTTAATACCTACATTTGAGAGCATTTAGAAATCAGAAATTATAATAAGCTGTTAGTGATAAATCTGTAACAGCCCTTCGATTACGAGAAAACCTCTTTTTAGTAGGAATGTTTCCACTCATGTTTGCTGTAAAGTTTAAGAACATTTTTCCTACGGCTATGTCAGCCCTTAGTTTAATCTTACATTATCCTACAAAAGTGAATGAAACTTCTAGAAGTACCTTGA

Publications

PMID - Link Title