Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NUDT21P1
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr11:117117702-117118711  UCSC
Coordinates (T2T) chr11:117132976-117133992  UCSC
Coordinates (hg19) chr11:116988418-116989427  UCSC
Strand -
Parental Sequence NM_007006.3
Parental seq. overlap 574 bp
Parental seq. overlap (%) 13%
Genomic Region Intergenic
Retrocopy Summary NUDT21P1, located on chr11:117117702-117118711, is a retrocopy of the parental gene NUDT21. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NUDT21
Full Name nudix hydrolase 21
Also known as CFIM25|CPSF5
Coordinate chr16:56429133-56451332
Strand -
Gene summary The protein encoded by this gene is one subunit of a cleavage factor required for 3' RNA cleavage and polyadenylation processing. The interaction of the protein with the RNA is one of the earliest steps in the assembly of the 3' end processing complex and facilitates the recruitment of other processing factors. This gene encodes the 25kD subunit of the protein complex, which is composed of four polypeptides. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus NUDT21P1
Gorilla Gorilla gorilla NUDT21P1
Orangutan Pongo abelii NUDT21P1
Gibbon Nomascus leucogenys NUDT21P2
Green monkey Chlorocebus sabaeus NUDT21P1
Rhesus Macaca mulatta NUDT21P1
Baboon Papio anubis NUDT21P1
Marmoset Callithrix jacchus NUDT21P3
Chimpanzee Pan troglodytes Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NUDT21P1
TATATATATATATATAACCTGATGGTGAACTTAGCCCAGGAAAAGGTGAAGTTGAAGGACTAAAATGCTTAATGACTGGGATACTGAGTCATCAAGATGGAGTTCTGAAAGATGCAAGACTGGGTCATACTGCATTGGTAACTGGTGGAGACCAAATATCCATATATTCCTGCATATATTACAAAGCCTAAGGAACATAAGAAGTTGTTTCTGGCTCAACTTCAAGAAAAAGCCTTGTTTGCAATCTCTAAAAATTACAAGCTCATAGCTACACCATTGTTTGAATTGTATAACAATGCACTAGGGTATGGACCTATTGTTTGCAGTCTCCCTCAGCTGTTGAGCAGTTTCAAATTTATATACAATGGAATTCCTGTGCAGTGGAGAAGTAAAAGAAGCCATTTCTGTGAACATAGCTATACAGTGTAGAAGAATAAATGTGATAGAAAAGATTTTTGCAATTATACTTTTGGTACAAAAGAGCCCCTCTATGAGAAAGACAGCTCTGTCTCATCCAGATTTCAGCAAATGAGGGAAGAATTGGATAAAATTGGAATGAGGAGTAACATAGCAGGGGATTCTGATTGTTTACAAGCACTGGTGTGGCTACTCTATGTATTACTGCTACTGCTGGGAGCAACTTTCTTCAAGTTGGTGAAGGCCAGGCGGTAGGTGAAGGCCAGGTTGGTGAAGGCCCTGGTGGTAg
>NM_007006.3
CTCCTCTTGCGCTGTCCTGTTAATGGCGGGCAGTAGCCGCTGAGGGGATTGCAGATAACCGCTTCCCGCACGGGGAAAGTCTACCCTGCCTGCCACTTTCTGCTCGCCGTCAGCGCCGGAGCTCGCCAGCATGTCTGTGGTACCGCCCAATCGCTCGCAGACCGGCTGGCCCCGGGGGGTCACTCAGTTCGGCAACAAGTACATCCAGCAGACGAAGCCCCTCACCCTGGAGCGCACCATCAACCTGTACCCTCTTACCAATTATACTTTTGGTACAAAAGAGCCCCTCTACGAGAAGGACAGCTCTGTTGCAGCCAGATTTCAGCGCATGAGGGAAGAATTTGATAAAATTGGAATGAGGAGGACTGTAGAAGGGGTTCTGATTGTACATGAGCACCGGCTACCCCATGTGTTACTGCTGCAGCTGGGAACAACTTTCTTCAAACTACCTGGTGGTGAACTTAACCCAGGAGAAGATGAAGTTGAAGGACTAAAACGCTTAATGACAGAGATACTGGGTCGTCAGGATGGAGTTTTGCAAGACTGGGTCATTGACGATTGCATTGGTAACTGGTGGAGACCAAATTTTGAACCTCCTCAGTATCCATATATTCCTGCACATATTACAAAGCCTAAGGAACATAAGAAGTTGTTTCTGGTTCAGCTTCAAGAAAAAGCCTTGTTTGCAGTCCCTAAAAATTACAAGCTGGTAGCTGCACCATTGTTTGAATTGTATGACAATGCACCAGGATATGGACCCATCATTTCTAGTCTCCCTCAGCTGTTGAGCAGGTTCAATTTTATTTACAACTGAATTCCTGCGCAGTGGAGAAGTAAAAGAAGCCGCTTGTCTCTGTGAGCACAGCTATATACAGTGTAGAATAAATGTGGTAGAAAAGTTTTTTTGGTTTTATCTCTTTTGCGATCCCTAAATTGCCACCTTTCTATTGTTTGAATAGTAAAATTAATATGAAGAACTAGATAGTGGTGTAAACAAATGTGATAATGTTTATTTACTTTCGGTTCTGCTCATACTTTTTTGTACAACATTAAAGAAAATGGACTTTTTTTATTTTAATTTCTCATTAAACTTCTAAAATTCTTATAGGTGAGGATCATTTTTCCCCCCACCTTAGGATGGTGAATGTTGCAACACAATGACAGGTTTAAGTCAGTCAAGTTTATTGGACCCTTGCTTTGATACCATTCTTGGGCACATACTCCAAGATTGTATTAGATTTTTGTGATGAAGAGCTTCCATTACTTCTGAAAACTATATTTATCTGAGTGAGTCCAAGGTGCAACTCCTAAATGAATTGTGTTGCAGAGAACTCCCAGTATAATTCACTGACCAGTACATTTTATAACCATCCAGGCCTTGGTTTGCAAGCAACAGACCTTAAACATACAGGAAACTATTAAAATTGGCTCGATCAGTAGTCATAGGAATTGGTATAAGAAGAGACTCATTTAGAGCTCAGAGTTTTCTTCACATAATGGGGGTATTAATTATTTGTGCTGTTGCGAAATTATGTGTCTTATTCTTAAAGCCATGGTAAAAATAGGGATCTGTGAAGGAAATTTCTAAAATTGGATGTATTAGGTTTTGAACTCTGAGATTGCACAAATATTCAATTAACTTGAAGTTGTGTACATAGAGAAGAAAATTTGGTTTTAGCAAATGACAGAGCCTTCAAAAATATTTTTGGAATAATGTGAATCAACCGAAAACTGGGGGCAAGGCAGAGGACAGGTTTTCTCAGGTTAAGAGAAAAACGAAATTTTAAAAACTTTAAAAAATACTGATAAATTCGGATCAAATTTGGGGGAATAAAAAATATTAGAGCAAAGGAGTTTGCTGGTTGTGTCATTATTTAATGATCAAAGTATAGCATGTATGCCTTATTACAGACTTGTTGACTATAGGCTTAATGTAAAAAGGAATCTTGCCAGATGTAGCTACTTAAGGAAAAAAGGGTTTTTAATAGAAATGAACTTTTGATTAGTATGGTGCCAGTCACAGGGCTATTTTCCTGAATATTGGGTGATGTCAAAGGTATATGATACTTGAGGAAATCAGGCCAAGTGTAGCTGAGCAATTAATAAACACTCAAGTTTTTTTAGTTGGGGTCATGTCAAACCCTCACATGGTGGTTAAGTAGTGACTAACTGTGCATGTCCTTCATGGTAGGTGAGCACCAGTCTCCATGATCAAAAATGCCCCAGTTTCCTTTGAAAAAGCCACTAGTTCTGTGAATTGTCCTTTTCCCTCCTGCCCCTAACAGTCCTACCCCTCTAGCCTACATTAGCATATTTCTCATGTAATGTATTTTGCTGGTAAGCTCATCCATTAGCTGCGTCCTTCAGCTATTCCTTTAGATTGGAGGAAGTGGATATGAAGATGGATTGATTCAGCTCACCTTCCATGATTGCTTTTGAGGGAAAAGCTACAGTGGCCACATTTCAGATGTTCACTTTTGCAATTTGTGGAGGGTGGAGAGAGGTAGACTTTTGTTGTGTGTTTTATAAAGTACTCTCAGTAAGGAGTGTTTGAGTTGAAGAGTCATCTGATTCGAGGCCACTCATGTTCTTTGTAACTTAAACTTTGACCAAGAAAttcttcacttctcacttcttcacttcttcCCAATATACAGTAAGTACGTGAGCCAGTCATCCATACACTAAGGCCTAGTTGAGAAAAACCTTTGATTCAGGATGGCTGGGTTACTAACCTTGAAATGTAAGAGATCTGGTTTTGAATGTAAAAGTTGCAACACACAAACGGAAGTCTTAAAAACTTTTTGCTCTGGTCAGTTACAGGTGGATCCCCAATAATCTGTTTTTGGTTTTCTGATGGAAATAATAGAATTAGGGGAAATCAAATCTGGTTGGTAGGTGTCTACAGTATTAGAAGAGGGTATAAGGGCACTGTTTAACACTAAGTTCTAATACTTCCAGAAACTGTGCATTCCAGATCTACATACTAAATGCTCTTATCATTTTGAAATGGGCTCTTGATTAATAGACCCATATTTTTTAGTGGCTTCTATGTTGTATATTTGTCTAAAATGAAAGCTCTTTTGCGTTCTAAAACTACAATATATGTCATCTTATTTTCCCTGAGTATCCAAGTATAGTGCAGATTCTATGTAAAACTACTAAATGACACTGGAATATGTTTAGTAGATTAGGGGGAAAAACTATAAAGGTTTATACAATTGTTTGTAGTTACATTTAGGATGGACTTATCCCTTTGGAGAAGAGTGAAGTTTGTTTTTTCGCCATGTGATGAAGACCACTGTGATTTTTTAAAAAAGTAGATAATACTTAAAATGGCGTAATAATTCTGCACTTGAATTTGTACTGTTAACAGCACATTTGGAAGATTTTAAAACTTTTTATTGTCTTATAAATAGCATTCACTTATTATTTTGGATATTTAAGGGTTCCATTAAGTTAACACTGTATTTGGACAAAGTGTGACCAAATTAGCCAGTCTGTTTTCTTCCATGTTTAATTAGAAGTGAGAGGTAGAAGTACTTCAAATTCAACAGGCCAGCAAGCAATCGGCTTAAAATTCCCTTTCTTAAATGTTGTGCTCTTATGTTCTCGGCTTTTTAATGACTTTATTTTTACAGTACTTGTTCAGTCACTTGAGATGAAATGCTTGGGGTAGCTTTTCCATCCTCAAACTTAATGTTTTTACTAGTTCATAGTGTTTGGAACAGTATATGCCAATCACTGAGACTGCATCAGAGTTTGCAATTTTGTATGTTTCATTGCCAAAGAAGGCTTAGTGGTTGTTGACTGTAGTATAAGTCAGCTTTCTGTAGCATAAGATTTGATTTTCCCATACTTACTTCACTTGTTATACATCACTGATTATTTGGGTTAAACTGGACTCATTTCAAGCAGTTTGCTTTTGTTCAAATCGTGATGAGAAACCTAATACTGTAATTTGATTTGAGCCATAAAACACATTTTAATATTAGCTTGTATTATAGTTATTAAGCTTGTTTTTGTGGAAAAAAACTTACTAAAACCTAGGTAACTCTAGATTAGGCCAGTTCAGGTGTATTTTGTATCTTAGTAATGGATCATATCGTAAAAATAGAGATAAGTTGGGAAGATATATTGATTATGCTGTTCTGTTGAGGGAAAGGTCATGTATTTAGAAATTTAAACTTTTGGTTATTGTGTTCACATCATAGTATTCAAGCATCATTTATAGTTTGGTTTTGAGAACTTTTCTGGTATTACGTTTATGGCAAATGTATAAAAGAAACAAGTTTTGGTTATATTTTTATATTTGTAAAGTAAGTTTGGTTAAAGTGATCACTGTTCTTTTTTTATTTTATTGTCATTTCAATAAAAAATATTTGAAAGAGAA

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