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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NDUFAF2P2
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr11:130284952-130285843  UCSC
Coordinates (T2T) chr11:130320789-130321680  UCSC
Coordinates (hg19) chr11:130154847-130155738  UCSC
Strand -
Parental Sequence NM_174889.5
Parental seq. overlap 295 bp
Parental seq. overlap (%) 33.4%
Genomic Region Intragenic (ZBTB44)
Retrocopy Summary NDUFAF2P2, located on chr11:130284952-130285843, is a retrocopy of the parental gene NDUFAF2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NDUFAF2
Full Name NADH:ubiquinone oxidoreductase complex assembly factor 2
Also known as B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin
Coordinate chr5:60945205-61153026
Strand +
Gene summary NADH:ubiquinone oxidoreductase (complex I) catalyzes the transfer of electrons from NADH to ubiquinone (coenzyme Q) in the first step of the mitochondrial respiratory chain, resulting in the translocation of protons across the inner mitochondrial membrane. This gene encodes a complex I assembly factor. Mutations in this gene cause progressive encephalopathy resulting from mitochondrial complex I deficiency. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NDUFAF2P2
Bonobo Pan paniscus NDUFAF2P2
Gorilla Gorilla gorilla NDUFAF2P1
Orangutan Pongo abelii NDUFAF2P1
Gibbon Nomascus leucogenys NDUFAF2P1
Green monkey Chlorocebus sabaeus NDUFAF2P1
Rhesus Macaca mulatta NDUFAF2P1
Crab-eating macaque Macaca fascicularis Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NDUFAF2P2
TAACTCCACCTACGATGGAGGAAATACTAAAGAATGAAAAATACAGAGAAGAAATTAAAAAGCAAAGATTTTTATGAAAACCAAAAACTCCTTAGTAAAGAGACTAGTGAGGAACTCTTGGCTCCACCAGTTCAAACTCAAAGGACATGGCTTTGCTCCATACTTCGGAAAGGAAGAACTCACTGGTTCCCACCAGCACTGGTAAAACCTTTCAGCCAGAATCCCAGATGCCGCAAGATAGAAGGAGCCACAGTCAGTGACTGCATTATGGTCAGATCGTTTTGTGTATATGGATGTGATGATTTTCACAAAGAAAAGAAGTCAAAATGTGGACAGCACGGGTTGGTCTCAGGATTTGTTGTGTGCCTTGTGGATATCACTGTCAAAAGAAGTATAGGAGCATGTGGGCATGAACTGGTTTGGGAACAAATACTACTCTATTCCAGAGTACAAGAACTGGAGAGGTGAGGACAAACTATTCAAGAGAAAAGAATTGTAGAAGCAGCAAATAAAAAATTAGACTGTGAAGTAGGGGATATTCCAACAGAATGGGAAGCTTAGATCAGAAGAACAAAAAAGAg
>NM_174889.5
ACCCCTACTGCGGGTCCCGCTGCTGGCAGCGCTGGAAACTGGGTGGACGGCATGGGTTGGTCTCAGGATTTGTTCCGCGCCTTGTGGAGATCGCTGTCAAGGGAAGTGAAGGAGCACGTGGGCACGGACCAATTCGGGAACAAATACTACTACATCCCGCAGTACAAGAACTGGAGAGGACAAACTATTCGAGAGAAAAGAATTGTAGAAGCAGCAAATAAAAAAGAAGTAGACTATGAAGCAGGGGATATTCCAACAGAATGGGAAGCTTGGATTAGAAGAACAAGAAAGACTCCACCTACTATGGAGGAAATACTAAAGAATGAAAAACACAGAGAAGAAATCAAAATAAAAAGCCAAGATTTTTATGAAAAAGAAAAACTCCTTAGTAAAGAGACCAGTGAGGAACTCCTGCCTCCACCAGTTCAAACTCAAATTAAAGGCCATGCCTCTGCTCCATACTTTGGAAAGGAAGAACCCTCAGTGGCTCCCAGCAGCACTGGTAAAACCTTTCAGCCAGGATCCTGGATGCCACGAGATGGCAAGAGCCACAATCAATGAATGCATTATGGTCAAATCTTTTCATGTATATGGATGTGACTATTTTAACAAATAAAAGAAGTGAAAAGTTA

Publications

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