Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SPICP5
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr11:33786825-33787948  UCSC
Coordinates (T2T) chr11:33923874-33924997  UCSC
Coordinates (hg19) chr11:33808371-33809494  UCSC
Strand -
Parental Sequence XM_006719239.3
Parental seq. overlap 993 bp
Parental seq. overlap (%) 77.1%
Genomic Region Intergenic
Retrocopy Summary SPICP5, located on chr11:33786825-33787948, is a retrocopy of the parental gene SPIC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SPIC
Full Name Spi-C transcription factor
Also known as SPI-C
Coordinate chr12:101475276-101486997
Strand +
Gene summary The protein encoded by this gene regulates the development of red pulp macrophages, which are necessary for iron homeostasis and the recycling of red blood cells. [provided by RefSeq, Aug 2016]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SPICP3
Bonobo Pan paniscus SPICP3
Gorilla Gorilla gorilla SPICP3
Orangutan Pongo abelii SPICP2
Gibbon Nomascus leucogenys SPICP1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SPICP5
GAAGAAATTTAGGATTTTTCTCTTAAAGCAAATACTAAAGAGGAAAAAAATTAACTATATTGTTGCTTTTATCAAAGAGCATGTAATCTATACTAACTTGTTGGGAAATTCTGCCAATGAACAACTTTTTTATAATACCAGAGCCATTGCACTGGAAAATAATTTTTTATTTTCATGATAGCCTACCGTTGAATTTACCATTCTGATATTAATGAAACATCTCTATAAAGGGTTGAAGTGTCTTCCTGCAACAATTGCTAAGGAACAGAATTGTCAATTTATTAATAAAATATGACATGTGTTGAACAAGAGAAGCTGGGTCAAGCATTTGAGGATGCTTTTGAGGTTCTGAGGCAACATTCAACTGGAGATCTTCAGTACTCGCCAGATTACAAAAATTACCTGGCTTTAATCAACCATCGTCCTCATGTCAAAGGAAATTCCAGCTGCTATGGAGTGTTGCCTACAGAGGAGCCTGTCTATAATTGGAGAATGGTAATTAACAGTGCTGCGGACTTCTATTTTGAAGGAAATATTCATCAATCTCTGCAGAACATAACTGAAAACCAGCTGGTACAACCCACTGTTCTCCAGCAAAAGGGGAAAAGGCAGGAAGAAGCTCTGACTGTTTGAATACCTTCACGAATCCCTGTGTAATCCAGAGATGGCATCTTGTTTTCAGTGGGTAGATATAACCAAAGGCATCTTTCAGTTTGTATCAAAAAACAAAGAAAAACTTGCCGAGCTCTGGGGGAAAACAAAAGGCAACAAGGAGACCATGACTTACCAGAAAATGGCCAGGGCACTGAGAAATTACAGAGGAAGTGGGGAAATTACCAAAATCTGGAGGAAGCTGACTTAGCATTTCAGTGAGGCCATTCTCCAAAGACTCTCTCCATCCTATTTCCTGGGGAAAGAGATCTTCTACTCACAATGTGTTCAACCTGATCAAGAATATCTCAGTTTAAATAACTGTAATGCAAATTATAATTATACATATGCCAATTACCATGAGCTAAATCACCGTGATTGCTAAATATACTCTCATATTTCATGGTTTACTGTAATCAAAAATCCCTACAAGTCTTAAGGATTt
>XM_006719239.3
CCCCTTTTGAAGAACTTCCTTAAAAACAGCTATTTAATGCAACTCTGCCAGTATGTTCTTGATGGTTATGTCTTAACAATTCTAATTTTTAAAAAAAATATTACTATTTTTTTTCATCAGAGCCATTGCACTGGAAAATAATTTTTTATTTTCATGATAGCCTACCGTTGAATTTACCGTTCTGATATTAATGAAACATCTCTATAAAGGGTTGAAGTGTCTTCCCGCAACAATTGCTAAGGAACAGAATTGTCAATTTATTAATGAAATATGACGTGTGTTGAACAAGACAAGCTGGGTCAAGCATTTGAAGATGCTTTTGAGGTTCTGAGGCAACATTCAACTGGAGATCTTCAGTACTCGCCAGATTACAGAAATTACCTGGCTTTAATCAACCATCGTCCTCATGTCAAAGGAAATTCCAGCTGCTATGGAGTGTTGCCTACAGAGGAGCCTGTCTATAATTGGAGAACGGTAATTAACAGTGCTGCGGACTTCTATTTTGAAGGAAATATTCATCAATCTCTGCAGAACATAACTGAAAACCAGCTGGTACAACCCACTCTTCTCCAGCAAAAGGGGGGAAAAGGCAGGAAGAAGCTCCGACTGTTTGAATACCTTCACGAATCCCTGTATAATCCGGAGATGGCATCTTGTATTCAGTGGGTAGATAAAACCAAAGGCATCTTTCAGTTTGTATCAAAAAACAAAGAAAAACTTGCCGAGCTTTGGGGGAAAAGAAAAGGCAACAGGAAGACCATGACTTACCAGAAAATGGCCAGGGCACTCAGAAATTACGGAAGAAGTGGGGAAATTACCAAAATCCGGAGGAAGCTGACTTACCAGTTCAGTGAGGCCATTCTCCAAAGACTCTCTCCATCCTATTTCCTGGGGAAAGAGATCTTCTATTCACAGTGTGTTCAACCTGATCAAGAATATCTCAGTTTAAATAACTGGAATGCAAATTATAATTATACATATGCCAATTACCATGAGCTAAATCACCATGATTGCTAAATATACTTTCATATTTCATGGTTTACTGGCATCGGAAATCTCTACAAGTTTTAATGATTTCTCCCTCCCTCTCTTTTTTTCCTCCTCTGAAGAAATTTAGGATTTTTCTCTTAAAGCAAATACTAAAGAGGAAAAAAAATTAACTTTATTGTTGCTTTTATCAAAGAGTATGTAATCTATACTAACTTGTTGGGAAATTCTGCCAATGAACAACTTTTTTATAATA

Publications

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