Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CCT8P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr21). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:147203123-147204984  UCSC
Coordinates (T2T) chr1:147603429-147605290  UCSC
Coordinates (hg19) chr1:146674704-146676565  UCSC
Strand -
Parental Sequence NM_001282909.2
Parental seq. overlap 1705 bp
Parental seq. overlap (%) 91.2%
Genomic Region Intergenic
Retrocopy Summary CCT8P1, located on chr1:147203123-147204984, is a retrocopy of the parental gene CCT8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CCT8
Full Name chaperonin containing TCP1 subunit 8
Also known as C21orf112|Cctq|D21S246|PRED71
Coordinate chr21:29056326-29073648
Strand -
Gene summary This gene encodes the theta subunit of the CCT chaperonin, which is abundant in the eukaryotic cytosol and may be involved in the transport and assembly of newly synthesized proteins. Alternative splicing results in multiple transcript variants of this gene. A pseudogene related to this gene is located on chromosome 1. [provided by RefSeq, Sep 2013]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CCT8P1
Bonobo Pan paniscus CCT8P1
Gorilla Gorilla gorilla CCT8P1
Orangutan Pongo abelii CCT8P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CCT8P1
TTCCTCCGCGGTCTTCTGAGCGGTCACGTGAACGGCTTCCTGCAGGCTGGCCATGGCGCTTCAAGTTCCCAAGGCTCCGGGCTTCGCCCAGATGCTCAAGGAGGGAGCGAAACACTTTTCAGAATTAGAAGAGGCTGTGTATAGAAACATACAAGCTTGCAAGGAGCTTGCCCAAACCACTCGTACAGCATATGGACGAAATGGAATGAAAAAAATGGTTATCAACCACTTGGAGAAGTTGTTTGTGACAAATGATGCAGCGACTATTTTAAGAGAACTAGAAGTACAGCATCCTGCTGCAAAAATGACTGTAATGGCTTCTCATATGCAAGAGCAAGAAGTTGGAGATGGCACAAACATTGTTCTGGTATTTGCCGGAGCTCTCCTGGAATTAGCTGAAGAACTTCTGAGGATTGGCCTGTCAGTTTCAGAGGTCATAGAAGGTTATGAAATAGCTTGCAGAAAAGCTCATGAGATTCTTCCTAATTTGGTACGTTGTTCTGCAAAAAACCTTCGAGATGTTGATGAAGTCTCATCTCTACTTCGTACCTCTGTAATGTGTAAACAATATGGTAATGAAGTATTTCTGGCCAAGCTTATTGTTCAGGCATGCGTATCTATTTTTCCTGATTCTGGCCATTTCAAAGTTGATAACATCAGAGTTTGTAAAATTCTGGGCTGTGGTATCACTTCCTCTTCAGTATTGCATGGCATGGTTTTTAAGAAGGAAACAGAAGGTGATGTACATCTGTCAAAGATGCAAAAATAGCAGTGTACTCTTGTCCTTTTGATGGCATGATAACAGAAACTAAGGGAACAGTGTTGATAAAGACTGATGAAGAATTGATGAATTTAAGTAAGGGAGAAGAAAATCTCATGGATGCATAAGTCAAAGCTATTGCTGATACTGGTGCAAATGTTGTAGTAACAGGTGGCAAAGTGGCAGACATGGCTCTTCATTATGCAAACAAATATAATATGATGTTAGTGAAGCTAAACTCAAAATGGGATGTCCGAAGACTCTGTAAAACAGTTGGTGCTACAGCTCTTCCTAGATTGACACCTCCTGTCCTTGAAGAAATGGGACACTGAGACAGTGTTTACCTCTCAGAAGTTGGAGATACTCAGGTGGTGGTTTTTAAGCATGAAAAGGAAGATGGCATCATTTCTACCATAGTACTTCGGGGCTCTACAGACAATCTGATGGATGACATAGAAAGGGCAGTAGATGATGGTGTTAATACTTTCAAAGTTCTTACAAGGGATAAACGTCTTGTACCCAGAGGTGGAGCAACAGAAATTGAATTAGCCAAACAGATCACATCATATGGAGAGACATGTCCTGGACTTGAACAGTACGCTATTAAGAAGTTTGCTGAGGCGTTTGAAGCTATTCCCCGTGCACTGGCAGAAATACTCTGGAGAAAACTCTGGAGTTAAGGCCAATGAAGTAATCTCTAAACTTTATGCAGTACCTCAAGAAGGAAATAAAAATGTTGGATTAGATACTGAGGCTGTAGTCCCTGCTGTAACGGACATGTTGGAAGCTGGTGTTCTAGATACTTACCTGGGAAAACACTGGTCTATCAAACTCGCTGCTAATGCTGCAGTCACTGTACTTAGAGTGGGTCAGGTAATCATGGCAAAACCAGATGGTGGGCCCAAGCCTCCAAGTGGGAAGAAAGACTGGGATGATGACCAAAATGATTGAAATTGGCTTAATTTTTACTGTAGGTGAAGGCTGTATTTGTAGTAGTATTCTAAGAATCGCGTGATGTTTTCTTATTCTCCTTACATTAAGAGGTATTTTGTGTTTGTATTCTTGGCTGGATGTTATAATAAACATATTGTTACTGTCAAAA
>NM_001282909.2
CCTCGCTTCCTCCGCGGTCTTCCGAGCGGTCGCGTGAACTGCTTCCTGCAGGCTGGCCATGGCGCTTCACGTTCCCAAGGCTCCGGGCTTTGCCCAGATGCTCAAGGAGGGAGCGAAACACTTTTCAGGATTAGAAGAGGCTGTGTATAGAAACATACAAGCTTGCAAGGAGCTTGCCCAAACCACTCGTACAGCATATGGACCAAATGGTACAGCATCCTGCTGCAAAAATGATTGTAATGGCTTCTCATATGCAAGAGCAAGAAGTTGGAGATGGCACAAACTTTGTTCTGGTATTTGCTGGAGCTCTCCTGGAATTAGCTGAAGAACTTCTGAGGATTGGCCTGTCAGTTTCAGAGGTCATAGAAGGTTATGAAATAGCCTGCAGAAAAGCTCATGAGATTCTTCCTAATTTGGTATGTTGTTCTGCAAAAAACCTTCGAGATATTGATGAAGTCTCATCTCTACTTCGTACCTCCATAATGAGTAAACAATATGGTAATGAAGTATTTCTGGCCAAGCTTATTGCTCAGGCATGCGTATCTATTTTTCCTGATTCCGGCCATTTCAATGTTGATAACATCAGAGTTTGTAAAATTCTGGGCTCTGGTATCAGTTCCTCTTCAGTATTGCATGGCATGGTTTTTAAGAAGGAAACCGAAGGTGATGTAACATCTGTCAAAGATGCAAAAATAGCAGTGTACTCTTGTCCTTTTGATGGCATGATAACAGAAACTAAGGGAACAGTGTTGATAAAGACTGCTGAAGAATTGATGAATTTTAGTAAGGGAGAAGAAAACCTCATGGATGCACAAGTCAAAGCTATTGCTGATACTGGTGCAAATGTCGTAGTAACAGGTGGCAAAGTGGCAGACATGGCTCTTCATTATGCAAATAAATATAATATCATGTTAGTGAGGCTAAACTCAAAATGGGATCTCCGAAGACTTTGTAAAACTGTTGGTGCTACAGCTCTTCCTAGATTGACACCTCCTGTCCTTGAAGAAATGGGACACTGTGACAGTGTTTACCTCTCAGAAGTTGGAGATACTCAGGTGGTGGTTTTTAAGCATGAAAAGGAAGATGGCGCCATTTCTACCATAGTACTTCGAGGCTCTACAGACAATCTGATGGATGACATAGAAAGGGCAGTAGACGATGGTGTTAATACTTTCAAAGTTCTTACAAGGGATAAACGTCTTGTACCCGGAGGTGGAGCAACAGAAATTGAATTAGCCAAACAGATCACATCATATGGAGAGACATGTCCTGGACTTGAACAGTATGCTATTAAGAAGTTTGCTGAGGCATTTGAAGCTATTCCCCGCGCACTGGCAGAAAACTCTGGAGTTAAGGCCAATGAAGTAATCTCTAAACTTTATGCAGTACATCAAGAAGGAAATAAAAACGTTGGATTAGATATTGAGGCTGAAGTCCCTGCTGTAAAGGACATGCTGGAAGCTGGTATTCTAGATACTTACCTGGGAAAATATTGGGCTATCAAACTCGCTACTAATGCTGCAGTCACTGTACTTAGAGTGGATCAGATCATCATGGCAAAACCAGCTGGTGGGCCCAAGCCTCCAAGTGGGAAGAAAGACTGGGATGATGACCAAAATGATTGAAATTGGCTTAATTTTTACTGTAGGTGAAGGCTGTATTTGTAGTAGTACTCAAGAATCACCTGATGTTTTCTTATTCTCCTTAAATTAAGAGTTATTTTGTGTTTGTATTCTTGGCTGGATGTTATAATAAACATATTGTTACTGTCAAA

Publications

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