Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NAA50P1
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr11:56205111-56205643  UCSC
Coordinates (T2T) chr11:56143471-56144003  UCSC
Coordinates (hg19) chr11:55972587-55973119  UCSC
Strand -
Parental Sequence NM_025146.4
Parental seq. overlap 482 bp
Parental seq. overlap (%) 7.9%
Genomic Region Intergenic
Retrocopy Summary NAA50P1, located on chr11:56205111-56205643, is a retrocopy of the parental gene NAA50. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NAA50
Full Name N-alpha-acetyltransferase 50, NatE catalytic subunit
Also known as MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p
Coordinate chr3:113716458-113746249
Strand -
Gene summary Enables H4 histone acetyltransferase activity; peptide alpha-N-acetyltransferase activity; and peptidyl-lysine acetyltransferase activity. Involved in N-terminal protein amino acid acetylation; establishment of mitotic sister chromatid cohesion; and mitotic sister chromatid cohesion, centromeric. Located in cytosol and nucleus. Part of NatA complex. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NAA50P1
Bonobo Pan paniscus NAA50P1
Gorilla Gorilla gorilla NAA50P1
Gibbon Nomascus leucogenys NAA50P1
Green monkey Chlorocebus sabaeus NAA50P1
Crab-eating macaque Macaca fascicularis NAA50P1
Rhesus Macaca mulatta NAA50P1
Baboon Papio anubis NAA50P1
Orangutan Pongo abelii Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NAA50P1
GCCTCAGCAGGTGGGGAGGATGAAAGGTAGCTGGATGGAGCTGGGAGATGGGACACCACACAATATTAAACAGTTGAAGAGAAGGAATCGGGTTATCTTTTCAGTCAGCTACAATGGTAAGTTCTACAAGGATGTGATGGAGGTGGTGAACGATCAAAACTTGCCTATTTCAGTGATGTTCCTGTAGGTGCAGTGTACTCTAGGGTGGCTCATTCACAGAATCAGAAAAGACTTTACATCATGACACTTGGATATCTGGCACCTTACCAAAGGCTAGGAATAGGAACTACAATGTTAATTCATGTCTTAAACATGTGAAAAAGATGGCACTTTTGACATCTATCTGCATGTCCAGATCAGCGGTGAGTCGGCAATTGACTTCTACAGGAAGTTTGGCTTTGAGATTATGGAGCCCAAGAAGAACTACTATAAAACCGCAAAGCCTGCAGATGATCATGTCCTGCAGAAAAACCTCAAATTACCTTCTGGTCAGAATGCAGATGTGGAAAAGACAGACAACTGAACAAATTACC
>NM_025146.4
GAAAGGTCACAGCGCGGCAGCGGGTCTGGCTGGCGGCAGCGGCGGGAGGGAGCCGAGAGACCCGAGTGCACGTGTGGAGAAGCGGCGGCACAAGCGCGGCGGCGGGAGACACTCCCGCCCCCACCAGACTCAAGCCCTCACTCGACTCTCGCGGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGGTAGCCGGATCGAGCTGGGAGATGTGACACCACACAATATTAAACAGTTGAAAAGATTGAATCAGGTCATCTTTCCAGTCAGCTACAATGACAAGTTCTACAAGGATGTGCTGGAGGTTGGCGAGCTAGCAAAACTTGCCTATTTCAATGATATTGCTGTAGGTGCAGTATGCTGTAGGGTGGATCATTCACAGAATCAGAAGAGACTTTACATCATGACACTAGGATGTCTGGCACCTTACCGAAGGCTAGGAATAGGAACTAAAATGTTAAATCATGTCTTAAACATCTGTGAAAAAGATGGTACTTTTGACAACATTTATCTGCATGTCCAGATCAGCAATGAGTCGGCAATTGACTTCTACAGGAAGTTTGGCTTTGAGATTATTGAGACAAAGAAGAACTACTATAAGAGGATAGAGCCCGCAGATGCTCATGTGCTGCAGAAAAACCTCAAAGTTCCTTCTGGTCAGAATGCAGATGTGCAAAAGACAGACAACTGAACAAATTACAAATGAACTTTCTTGCACTTGCTTGTCGCCAAATAAAAGAGAGGCCCATTGATTCCTCCCCCACCCCAACACTTTTCTTTTAAAGCTTTTCTCCCTCCttgttcttgtttttctttcttcctttccttttctctGAGAGTTTTAATACTTTCAAGGACTTTAAAAAAATAATCATGTTTGAATTGTTTTCTCTTATTTTTGTGAGGTGGTTTGAAGGAAGGACAAGGTAGATCTGTTTAGTTTTGCAGTTGAAGTTAGATGGTCCTAAACATTTAATTGTCAAATAATTTCAAATTTAATGTCCTGCTTTCACATTGAAGGGCAGAGCCTACAAAACATTGTATATTTCAAAAGACAAAAAGAAGCAGCAGCAGTATCTTGTTCTCTAATTCATAGACAAGTTGAGTGTGTTTGTGGTACTTTGGGTTTTTAAACACTTTGGGATACTAATCCCTAGACATTGCCTTCACTCCACCTTTAGTCCTTCTGAGCACTCTCTCGGGAGTTGGAACATTGTTATCCTTGTAAGAAATACTAAGCTTATGTTGATTTTTAAGTAATTATATCTTCTCTTCTTGCTGGTGGGTGGGGCAGTTTGGTTTAGTGTTATACTTTGGTCTAAGTATTTGAGTTAAACTGCTTTTTTGCTAATGAGTGGGCTGGTTGTTAGCAGGTTTGTTTTTCCTGCTGTTGATTGTTACTAGTGGCATTAACTTTTAGAATTTGGGCTGGTGAGATTAATTTTTTTTAATATCCCAGCTAGAGATATGGCCTTTAACTGACCTAAAGAGGTGTGTTGTGATTTAATTTTTTCCCGTTCCTTTTTCTTCAGTAAACCCAACAATAGTCTAACCTTAAAAATTGAGTTGATGTCCTTATAGGTCACTACCCCTAAATAAACCTGAAGCAGGTGTTTTCTCTTGGACATACTAAAAAATACCTAAAAGGAAGCTTAGATGGGCTGTGACACAAAAAATTCAATTACTGTCATCTAATGCCAGCTGTTAAAAGTGTGGCCACTGAGCATTTGATTTTATAGGAAAAAATAGTATTTTTGAGAATAACATAGCTGTGCTATTGCACATCTGTTGGAGGACATCCCAGATTTGCTTATACTCAGTGCCTGTGATATTGAGTTTAAGGATTTGAGGCAGGGGTAATTATTAAACATATTGCTTCTATTCTTGGAAAAATAGAAGTGTAAAATGTTAATAATACAAATGTCACTGTGACCTCCTCCACTGAGAGGACTGGTTTATGCCAGATCATTTTCCGGCACACACGGAGTGGCTTTGACAGATTGATAACTTTGTAAGATGGGAGACATCTGAAATATTCATGTTTTCCTTTTGTAGTCCCATCTCCACTATTTAGAAATGTTCTCAGACTTTAAAATAATGCACAGGGCTTGAGCTTTCTGTCATTTGACTTTAAAAGGAAGTTTCATTCATATTTATCCTCTTATGTAAAATTGCGGTATAAAGTCTCATTTCCAAATATGTTAAATGACAAAATTATTTTATAAAATGTTTATGCACACTTTATAACCTTAAGTTTTTATTTGAGAATGTGAAAGTACAAAGTGCAGTAGACTTCAACAATCTTGAGTGCCAAGAATAATACAGAAAAAGAAGACAGTTGATGAATGAGTTTATAGGGTTCTAATCTTAAGATGGTAAAAATGTAGAAAGACCTTGCTGGTTTTTTGGGGGTATTCGTTTCTTAAACAATCCAAATCTAAGCTTAGAAGAAAAGTTTAGCGTTAAGCACCTTTATCTTCATGAATAAGCTTCAGCTTGCTCTTGGCAAGAGAAGAGTGCTTGAGTTACAGAAGGCATAAGTAGTTTGAAGAATGCAGCAGCCTTTTTGTAAACTTCCCAGATATCAAAATAGACTTTGATATATAAATGGTTTTCTGAGATGACACTGCCTCTATTTCTATAACCATTTCACCTGGACTATCTAATCAGTCCTATGAATGTATCCCTAAATGTGGTTATTGAAAACCTAATAGCTGCCTCATGACAAGTACATGTTATTTAAGGAGGAAAAAATATTAAATTTTGAATTGAGTGTGTAGGCTCCCTATCATTATATATAGAGTTTCTTTTTCCACGGTAGTCAGTGACTTAACCTGAATTGTAAATGTTTGTAAAGGGTTAATTGTCCTACATCAAACTTAGTTAAATAATTCCATCCACTTATGGAGGAGGAGGAGAATGTGGAAGAGGTAAAAAGCTGGGCACAAGTTCATATGCCTATGAGTCAGTAAAGACTGAAGTAATGTCCTATGTTGAGCTGGTTATTTTGATATATGATAATAATTATCTTTGAAGTAGAACAATTCTGTTAACTGGAAAATCACAGGATATATCCATCATATTTTTCAGGACAGATAGTTTTTACTGTGGGGCAAATAGGTTAAAATTACACTATGTTAGTTGCATTTAGGTTTTAAAGCAAAGAATCTGTAGAGAAATCTATGCAATATATAGTTTGTCCAGATTAGCTTTCATTTGGGGAATGAAGTTCTGAAATATCTAAAGCAGTTTACTCATCAATTGAAAAGTCCTCCAAAAAGAGAACTATTGGGAAACCATGGTGTGGTGGTGGAAAAGAAAAGCTCCCTCAGTTTTTTGGAGGGAATAACTTAAAAAAATACTTAAATGGCTAAGTTTACTTGGTGCAGTTAAGAATTAAACTTGTCAATTTTAACATTGCTGTTACATCTGAAATAAACTTATGTGATGTTCTGGTAGTGATCTGTGATATCTGTAAATGTCAAAACTGTATTGTTGAATTCTGCAGCCAGCAACCGTACATACTCATTGTGTAGTGTTTCCCTTACTGCTTTTATTTACTTTCACATTTAAGATCTAATTTTAAAATCATTAAAATAGGCCAAGTGTAATTAAGGCATCCTAATTCAGATCTTCTGTGACTTGCTAGGTACAGTGCCCAATATCTACAATTCAGTTCCAATGAGAGGGAAAAAGTAAGATCCAAGGAACTGTCTTGCTGCTGTATTTTTAATGTAATTATTAGAAATACTTGACACTTTAGGCTGCAATCTAGTTAGTAATGTTTATTGGCTACAGACAACATATTCAGGTGTTTTGTTTTTCTTCCTTGTAAGGAAGGAGTACGGTAGTTCAATGAGTTGGGAATTGGCTTTTAAGCTTTTTATCAAACATGAATTTAAGATTTTTTCTTTAACAGAATTCAGTATTTAATATTTCTAGTCAAAATTGTTATAATTAGATTTTTGCTTTTTTCATTTAAGAAGCAATGAGTGATCCTTGTCTAGTGTGTCTCAGTTATTACTgtagtttaaaacaacaaacaagtattaccttccacagttctggatcaggaatctaggagctgcttaactgggtggttctgtcttgagatctcagaaggttgcagtcaagctgttagccaggactgtaccatcttgaagcttgacaaggctagaggagccatttccaagatgtcttgcttacgtggctcttgggcttctgttcctcactgtgtgggtatcacacacagtgcctgatgctcacgtggctcttgggcttcagttccttgggcaccagttgcctggtggacaactggtatgtggcttcccctagagcaggtgatataagaaagtgagcagaaaccatacttttttatgacgtagcctcaggtgacattatttctgccatattccatgagtcacacagaccaaccattgaatcagcttggtatagtgtgggaggggactgcacaaggatgtgaatactgggaggtggatatcattgggccctctaggagactggctatcacTGCTCAGAGAAGATGCTGGGCTTCGTTGACTCCCAAGGTCAGGGTAGTTTTGGTTAGGTTGTGTTTTATTAGTCTCTAAAAGGAGTAGTTTTCTAAATGAGGGTTATAAAGCACTGCACTTTACAGTTATTCGGGATATAAAAGAAATAGTGGGTCTAAAGGCTGTGCTCTTGTGGTTGGGTTTTCAGTGGGGAGGGGAGACTAGTCTGTCTCAGACTGATGCTGTTCTCACTGATTTGAATATTTCTGGGAAATTGGATACTACAGTCACAAATAGGAACAGTAAGCCTATAGAAGTTTTTCAGGGAGTAAATATTTTCTATGGCAGTGTCCTGAATTGGTTCTCCCTTGCAAGACTGAACTGTAGGAACTTAGTCCTAGTTTATGATACAGCCAAGTAACATAGTCACATGGGAAAAAGAGCTTGAGTCAGATTTCTTAATGTGTGTTGTTAACTTGGTAGAACATTGAGAATTATTTAAGTCAGAGAACGATCTGTTACTGGGGCAGAAATTCTCAACCTTTTCAGTTCTCCAAAATTTAAGATACTTGATTTCTTAGGTAAAATGtttttgtttttgttttggagacagagtctcgctctgtcgcccaggctggagtgcagtggcgcgatcttggctcactgcaaactccgcctcccagattcaagcaattctgcctgagcctcccaagtagctgcgactagaaagcgcatgccaccacgcctggctaattttttgtattttagtagagatgggggtttcaccgtgttgcccaggctggtctcaaactcctgagcttaggcaatcctcctggggcagcctcccaaagtgctaggattacaggcgagccatggcgcctggccAGTAAAATGTTTTCTATCTAGAATGAATCAAGGTATTTTCCTTGCTCAGTAGCTTCTAGAATAAGAAAAAAATAGCAGCAAGATCTGATTCAGAAATAGTTGGGAGCAGAAAGTTAATATGAAGGAGTTGCTACTTGTTAACAGCCTAGAGTTGAGATCTAGAAGAATTATTACCTTTTTAAATTTGTGATGAAAGCTTAAATCCAGCATTTGGGAAGTTACTCTATTGGCTGAACTATTTTGGAGTTTGTAAGCTTTGTATTAGATATTCCTGATTTAACTGAAACTAATTTGCCACATAGCTTTAATTTCATCCCAGTTTTACTTGTTTTACTGTCCTCAAAAACTCAAGACATCTGAACTCAAAGGATCTAAGCAGTATAAATTAAAGCACATGTTGAATCACTGTAGCTTTCGTAGGACATCTGATTATAATGCTTTTCTTTGTTTCTTTGTCCATACTGAACTTGTCTAGTTTATCTTTGAGAAACATTTGCTAGTATCAAAAATCTTCTGTAAAGATTTGAACAATCTTGAATTCTCCTTGTCACTAGCCATCTCTTCCCCTAAAGTATAATAAAACTGTCAGGTACTATA

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