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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name C18H18orf32P1
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr18). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr12:21153144-21153622  UCSC
Strand +
Parental Sequence XM_005586740.2
Parental seq. overlap 396 bp
Parental seq. overlap (%) 40.7%
Genomic Region Intergenic
Retrocopy Summary C18H18orf32P1, located on chr12:21153144-21153622, is a retrocopy of the parental gene C18H18orf32. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name C18H18orf32
Full Name N/A
Also known as -
Coordinate chr18:32332538-32339686
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens C18orf32P2
Chimpanzee Pan troglodytes C18H18orf32P2
Bonobo Pan paniscus C18H18orf32P2
Gorilla Gorilla gorilla C18H18orf32P2
Orangutan Pongo abelii C18H18orf32P2
Gibbon Nomascus leucogenys C4H18orf32P3
Green monkey Chlorocebus sabaeus C18H18orf32P1
Rhesus Macaca mulatta C18H18orf32P1
Baboon Papio anubis C19H18orf32P1
Golden snub-nosed monkey Rhinopithecus roxellana C21H18orf32P1
Marmoset Callithrix jacchus C13H18orf32P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C18H18orf32P1
GGAGCTCAAGCCTGGGACAGTGGTATGCATTCCTTGTACTGTCATTTCAACTCACCCCTGGATCTACAAAAAATTCCTGGAGTCATACATGTACCCTCTGATTTCCCTTTGTGTTAGTCACATATGGCCTAGAAAGCTGTATAAGAAGCTGATGATAAAAATAAAGGCCAAGTAGACTGTAAAGGTTTAGACATAAATGGATTACCAACAAAAGGACAAACAAAAATCTCTGACAAAGAGAAAAACTGAAGCAATTTTTCCAAAGGACCTCGTCATTTTAAAAATGGACCTGGTAATACGAATCACCTTCTTTTTTATTGTCTCTGACCTCTTTCTCTGAGACTTGAATTCAGGATAGGTAGTTTAGATATTTACCTTTTATGAATCAGGAAATACATGGTAGGTATGTGTAAAATGTAGTCAGTTGTATTTAATGACCTCATTTCTGAATTCCATTTTCACTAATATAGCTTTCATTT
>XM_005586740.2
TGAAAATAAGAAATCTTAACATGTTGAAGAGCTCAAGCTCGGGAAAATGGTGTGCATTCCTTGTATCGTCATTCCAGTTCTGCTCTGGATCTACAAAAAATTCCTGGAGCCATACATATACCCTCTGATTTCCCCCTTCGTTAGCCGTATATGGCCTAAGAAAGCAATACAAGAATCCAACGATCCAAACAAAGGCAAAGTGGACTGTAAGGGTGCAGACATGAATGGATTACCAACAAAAGGACCAACAGAAATCTCTGATAAAAAGAAAGACTAAAGCAGTTTTCCTAAAGGACCTCATCATTTAAAAAATGGACCTGATAATATGAAACATCTTCCTTGTAACTGTCTCTGACCTTTTTATCTGAGACCGGAATTCAGGATAGGAGTCTAGATATTTACCTGATACTAATCAGGAAATACATGATATCTGTATTTAAAATGTAGTTAGTTATATTTAATGACCTCATTCCTAAGTTCCTTTTTCATTCATGTAGCTTTCATTTGTTATTGCTGTTTGAATAATATGATTAAATAGAAGGTTTGTGCCAGTAGACATTATGTTACTAAATCAGCACTTTAAAATACTTGGTTTTCTATCTAATTCATAGGAATTTGACTGCTGTTTGCTCTACTTTCTTTGGGCTCTTCTAATTTGAGTGGAGTACAATTTTATTGTGAAACAGTCCAGTGAAACTGCAGGGAAATGCAGGTAGAATCTTGGGAGGTAATAATGATGTGAAACATAAAGATATTATAATTACTGTCCAACACAGTGGAGCAGCTTGTCCACAAATGTAGTAATTACTATTTATTGCTCTAAGGAAGATAAAAAAAGATAGGGAAAAAGGGGAAACTTCTTTGAAAAATGAAACATCTTTTACATAAATGTCTAATGTAATTATAAAATGTTAATCCTTACTGCATTTCTTCTGTTCCTACAAATGTATTAAACATTCAGTTTAACTGGTAA

Publications

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