Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name YPEL5P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:182182037-182183122  UCSC
Coordinates (T2T) chr1:181538691-181539776  UCSC
Coordinates (hg19) chr1:182151172-182152257  UCSC
Strand -
Parental Sequence NM_001127401.2
Parental seq. overlap 936 bp
Parental seq. overlap (%) 37.3%
Genomic Region Intergenic
Retrocopy Summary YPEL5P1, located on chr1:182182037-182183122, is a retrocopy of the parental gene YPEL5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name YPEL5
Full Name yippee like 5
Also known as CGI-127
Coordinate chr2:30146568-30160533
Strand +
Gene summary Predicted to enable metal ion binding activity. Predicted to be involved in cell population proliferation. Part of ubiquitin ligase complex. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes YPEL5P1
Bonobo Pan paniscus YPEL5P1
Gorilla Gorilla gorilla YPEL5P1
Orangutan Pongo abelii YPEL5P1
Gibbon Nomascus leucogenys YPEL5P1
Green monkey Chlorocebus sabaeus YPEL5P3
Crab-eating macaque Macaca fascicularis YPEL5P1
Rhesus Macaca mulatta YPEL5P1
Baboon Papio anubis YPEL5P1
Golden snub-nosed monkey Rhinopithecus roxellana YPEL5P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>YPEL5P1
AGGTTTTTAAAATTTCAGCTCCAAAAATGGGCAGAATTTTCCTTGATTATATTGGCAGTACCCATTTGTTTTCTCGTGCAAACTGTGATATAATCCTGACCAATGGCTCAGAACTCAGCTCATCTCTACTAGGTGCACAGGCACCACTAGCAGGGCGTTTCTTTGTCACAAAGTAGTTAACCTACAGTATGGTGAAGTTCAAGATCGGATCATGCTCACTGGCTGCCACATGGTTCAAGGTGTGAGCTACAAAAACCGCAACAGCCAACTGGGATGGATCTGTGAGTTTGCCACTGAAGACAGCCAGCATTATAAGGAAGGCTGTGTGATTCTGAAATGTGCTCTAGTTAGAGAGAATGAGGGCTTTGAGGAGCATGTACCATTCAATAACTCTTGGAAGAAAATGAGCTCAATCCATCTTTTTCCAGGTTTCCTTCACTGAAAACAAAAATCTGCTTACACACACTGCCAACTTAGTATCAGAGTCAGGTTCATAAACTGTGGAACAAGAGGTTGTGAGAATCTAAGATGGAACCTTTCTTTCTTTTTTTAAAAAAAGTTTTGTATTTTCCATGTAATAGCAGAGTGTGGAAAGAGTATTATGCAGATGTCATCAATTTTTCCCTATGTTTACATCTTAAGGCAGAAGAGTCTGTCTGCAACCATGTGATGGGCTGTGTAAAGAAAAAATCTGGGCTATTAGAGTGGAAAAGTGTGTTTTATATAAAATTTGAAAGGAAATATGTCAAGAGCATGGGTTTTTAACTTGAGCTTCATTTTAAACTTATTTTTTAAAAACCCAATTATTTTACCTGATTTGCTACCTTCAGAGAAGAGATCCAAATCTGGGCCGAGCACTAAGGACTCAGTTTTGGCATTACCTGTGCCGGCCAATGTGCCATATTCTTGTTGGAGATGAACCATAGCATTTTCCTTGCCAGTCTTGACCCAAAGGTGTCACCATTCCAGTTATTTATCACCATGTAATTGGTGTTGATTGGAAACTTTTTGTGAAATGGGGAAGAACTGCTTTGTTGTCTTTTTCTTTGTAACAAGCATAGTAATATAAATAAAATAATAGTTGGG
>NM_001127401.2
ATACCAGCTGAAGAGCGACAAGCCGCTGGCAGCCGCGGATCTCACCGCCGCTCAGGAGATCTGTTGGTAATCTGAGGATTTTTATTCTACGTCGTCTTGACAGATGGAAAACCTGAAGTAACTTCGGGCTAACCTTGTGTTTTTGGAAAATTAGTAGACTTGGTGGTGAAGAAACTGGGAGGAGTAGGATATTAGCTAACTTTGCATAGCCACATATAGAGCGTCGCAGCTGCATTCCACCAAAGAGGAACCAAAAGGCCTGTGGTGTTCCCAGGGTACATATTCATGCCAGAAGTGAAGTGCTTTGGTGAATTCGTTTCCTGAAAGTTTATCGCATACTTGTACTGGGTTAGCCTTATGCCAGCCTGGACCATCTTGgaggcagtgtaggatcatggaagaactttgaattagGTTTTTAGAACTTCAGCCATAAAAATGGGCAGAATTTTCCTTGATCATATCGGTGGTACCCGTCTGTTTTCTTGTGCAAACTGTGATACGATCCTGACCAACCGCTCAGAACTCATCTCCACTCGTTTCACAGGCGCCACTGGCAGAGCATTTCTTTTTAACAAGGTAGTTAACCTGCAGTACAGTGAAGTTCAAGATCGGGTCATGCTCACTGGCCGCCACATGGTTCGAGATGTGAGCTGCAAAAACTGCAATAGCAAACTGGGATGGATCTATGAGTTTGCCACTGAAGACAGCCAGCGATATAAGGAAGGCCGCGTGATCCTGGAACGTGCTCTAGTTCGAGAGAGTGAGGGCTTTGAGGAGCATGTACCATCTGATAACTCTTGAAGATACAGAGAGAAATCCATCTTTTCCCAGGTCTCCTTCACTGAAAACAAAAATCTACTTACATACACTGTCACCTTAGCATCAGAGTCGGATTAATGAACTGCGGAACAAGAGGTTGTGAGAATCTAAGATGGAACctttctttctttctttctttttttTTAAATTTTGTATTTTCCATCCAACAGCAGTGTGTAGAGAGAATATTATGCAGATGCCGTTAATTTTTTACCCTATGTTTACATCTTGAGGCAGCAGAGTCTGTCTGCAGCTATGTGGTGAGCTATGTAAGGAAAAAAATCTGGGCTGTTAGAGTGAAAAAGTGTGTTTTATGTCAATTGTGAAAGGAAAATGTTAGGAGTATGGTTTTTAAACTTGGGCTTCATTTTAAACTTTTTTTTTTAAACCCAGTTATTTCACTTGATTTGCTAGCTTCAGAGAAGAGATCCGAATCTGTGCCCAGCGCTAAAGGCTCAGTGTTAGCATGGCTTGTGCTGGCCGGTGTGCCATATTCTTGTTGGAGATGAACCGTAGCACCAGAGCCCATTCTTCCTTGTCAGTCTTGGCCCAAAGATGTCACCATTCCTAGTTATTTGTCACCACATAATTGGTGTTGATTGGAAACTTTTTCTGAGATGGGACAGAACTGCTGGGTTGTCTTTTTCCATGTAACTTAAGCATAGTAATATAAATAAAGTAATAGTTGGATGCTTTTGGTCCTGTGTTGCTTTTAAAAACACCTTATAAAAGAGGAGAGTATTTGATAAGCAATTTTCATAGTAGTAAAGTTTTTTTTCATCTCTTAAACTAAATTGACCATGCATATAATATTCTTTGTTTAAATGAAAGCATACTGTTGAAACCCGCAGTGTTGCATTTAGAAAACAGTTGAACAGAATGTCAATGTGCATTCATGCAAAAAAACATTTAATCTGCATCTGTTTTAGAAAAGGGGGAAATGAAGCAACTTGTCTAAAAATACTGCTTTACAAAGCATTTCAGCCTTTCCCCCTCAGTTTTGCATTGATTTTTTGACAAGTCTGTAGAGCCTAATAGTTTCCATCAAAGGCCTAGATCTCTTATTTAGCATTTTTTTCAGCTCTTCTCTCAGAAGTTCAGCTGTTGAAACGAAAACTGTACTTTGTACCCTCACATACAAAGGGATCAAATTTGACCTGGTGTTATTTTAGCCCCAAATTTATGACATTACACAATATTAAAATGTAAATGTTTCTTTACCCAAACTACTTCTAGATATTCTAGTATTTGCTTCTGGTGGAATTAAATGACGGTAAAATTGGCTAATTATTtgaatgaatgaatggatggatgTTTTGCATGCTCAATTTCTAGGTCCTTTGTCTAGAAAGGAAATTTGCCTCAGTTGAATTAGTGAAATATTTCTGTCGTTGATATTAAAAGTGACTTCTGAGTACAGTTAAGTTCCTCCTATTTGCCACTGGGCTGTTGGTTAGAAGCATAGGTAACTGATTAAGTAGGTATGATACTGCATTTGAAATAAGTGGACACAAACTATCCTTTCTCCACCATGGACTCAATCTGAGAACAACAGCATTCATTTCCATTCATTTCCATACTGGCTTTTGATTATATGCAGATTCCTAGTAGCATGCCTTACCTACAGCACTATGTGCATTTGCTGTCACAATAAAGTATATTTTGTCTTGCA

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