Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name C3H7orf73P5
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr20:21417867-21418070  UCSC
Strand -
Parental Sequence XM_015447360.1
Parental seq. overlap 176 bp
Parental seq. overlap (%) 10.8%
Genomic Region Intragenic (OTOA)
Retrocopy Summary C3H7orf73P5, located on chr20:21417867-21418070, is a retrocopy of the parental gene STMP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name STMP1
Full Name N/A
Also known as C3H7orf73
Coordinate chr3:168639462-168652501
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens STMP1P5
Chimpanzee Pan troglodytes STMP1P5
Bonobo Pan paniscus STMP1P5
Gorilla Gorilla gorilla STMP1P5
Orangutan Pongo abelii STMP1P4
Gibbon Nomascus leucogenys STMP1P2
Green monkey Chlorocebus sabaeus C21H7orf73P1
Baboon Papio anubis STMP1P5
Marmoset Callithrix jacchus STMP1P4
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C3H7orf73P5
AGGCTAGGACCAGCCCTCGGAGCTACAGCTGCCCTTCATCCCCCTCTCGCCCTCCCTACCGACATCCTGCTCCAGTTCCCACTTGGATTTACTTTGGAGAATGTGGTTGAAATATAGCTGGCTCAGAACCATGACATACCAAACCTAGCTTTAAAAACTTGAAGAAATTTAAAAAGACTTGGATGCCAAGAAGAAATCCCCTAC
>XM_015447360.1
ATGGGACCCGCTGCTCATGCAGTCCTTCTAGGCCAGAGAGCCCTAAGCTGGGCTGTGTATCAGAATCGTCCGCGTGCTGAGAATAACACAGATTCCTGGGCCCCGGCCCAGGTTTACAGAGGCGGGATGCTCAAAGCTGCCCAGCCAGGCTCGGGACTTGGCTCCTCGCAAGTCTTGTCGCGCCCTCGCTGCCCGGCTGGTTCAGCTTGTGAGGCCGACGCGCTCCGCCAGGGGGAACCGGGACGCTGCGACGCTGCGAGTCGTTTCCgggcgcgggctgggcgggaggagcgaggcagggcgggacggggTGTGACCCGGAAGTCGACGGGGCGTTCCGCCCCCCGCGCATGGGGAGGTAGGCTCGGACCGGCCCGCGGAGCTGCAGCAGTCCTTCGCGCCCTCCTCGCCCTCCCCACCGACATCATGCTCCAGTTCCTGCTTGGATTTACATTGGGCAACGTGGTTGGAATGTATCTGGCTCAGAACTATGACATACCAAACCTGGCTAAAAAACTTGAAGAAATTAAAAAGGACTTGGATGCCAAGAAGAAACCCCCTAGTGCATGAGACTGCCTCCAGCACTGCCTTCGGGATACACTGATTCTACTGCTCTTGAGGGCCTCCTTTACCATCTGAACCAAAAGCTTTTGTTTTCGACTCCAGCCTCAGCACTTCTCTTCTTTGCTAGACCCTGTGTTTTTTGCTTTAGAGCAAGCAAAATGGGGCCCCAATTTGAGAACTACCCTACATTTCCAACATACTCACCTCTTCCCATATTCCCTTTCCAACTGCATGGGAGGTTCTAAGACTGGAATTATGGTGCTAGATTAGTAAACATGACTTTTAATGAGTAGCGTCTTCTTTATTGTTTGCGATTTTTACTACCTTTTGTCAAGAGAAAAACAGATGAGTTTTGTATAGCTGGTCAGATACAAATAATAGTGACTTCACAGTTTAGCAATTATAATGGGTACTTTTTAAACATTTGGTACTAAATTATGTTGCTACAAAGTAATTAAAATTAATATCTAGAGCTAGTTTTTGGTGAATTATTCATTTATTTTGTACTGCTGTTAGGCAGCTCTGTAGTTGCTAATTTAACCAATGAGTCAATTTGCTGTTCATTAACTAAGAAATGATTCTGAGAATCCTGTCAGGAATTGGGGAATGAAAAAATATGCAAAATAATGGTCTTTGTCCCAGTAGAGTTCGTAGTCTATTTAGTGTGCATGTTTTTCCTTAATGATGTATTTGATCTGACTTTTCCTTCTCAGAAGAATCATACTTGGGATTACAGGTACATTTGATGTTATGTGATGGATAAGTGAAAAGTTTTTAAAGGAGATTTTATACCTTTTCACATTAAAAAAGGTATTTGTACTATTACTTTGTAGTGATTCTCTTAAGAAAAAATGTAGCCCAAATGTATAGTAAAATCAGCAGCTCAAGAAGAATTTCTGCTTCTCTTTGTAGTTGATGCTTTGTTTTATCCTGCAGTCAGAAATTCCCTGTATTTGTCAAATGTATAATCAGCTTGTATTGTTTTTAAATTTAAAAAAAATTGAATAATTAACTTTTCCCATAGGACaagatacaaaagtaatttcacgtaaagggcctttcccac

Publications

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