Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NIF3L1P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:187714198-187715311  UCSC
Coordinates (T2T) chr1:187067178-187068291  UCSC
Coordinates (hg19) chr1:187683329-187684442  UCSC
Strand -
Parental Sequence NM_001142356.1
Parental seq. overlap 803 bp
Parental seq. overlap (%) 55.8%
Genomic Region Intergenic
Retrocopy Summary NIF3L1P1, located on chr1:187714198-187715311, is a retrocopy of the parental gene NIF3L1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NIF3L1
Full Name NGG1 interacting factor 3 like 1
Also known as ALS2CR1|CALS-7|MDS015
Coordinate chr2:200889327-200903932
Strand +
Gene summary Enables identical protein binding activity. Involved in positive regulation of transcription, DNA-templated. Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus NIF3L1P1
Gorilla Gorilla gorilla NIF3L1P1
Orangutan Pongo abelii NIF3L1P1
Gibbon Nomascus leucogenys NIF3L1P1
Green monkey Chlorocebus sabaeus NIF3L1P1
Crab-eating macaque Macaca fascicularis NIF3L1P1
Rhesus Macaca mulatta NIF3L1P1
Baboon Papio anubis NIF3L1P1
Golden snub-nosed monkey Rhinopithecus roxellana NIF3L1P1
Marmoset Callithrix jacchus NIF3L1P2
Chimpanzee Pan troglodytes Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NIF3L1P1
AGATTCCCTGATCTGCAAATCTCATTATTTCATGGATTTGAAGGCTCTTCTTGCCTCCTTGAATGACTTTGCATCCCTCTCATTTGCTGAGAGTTGTGACAATATTGGATTACTGGTGGAACCAAGAGCATCACATGCTATAAACACACTCTTCCAGACCAATGACTTGACTGAGGGAGTGATGGAGGAGGTGCTGTGAAGGAAGGCAGACCTCATTCTCTCCTGCCATCCACCAATTTTCAGACCTATAAGGCACATAACCTAGAAAACCTGGAAAGAACTCCTGGTAATCCAGGGTCTGGAGAACGAAGTTGGTATGTATTTTCCTCACATAGCCTATGATGCTGCACCCCAGGGAGTTTGCAACTGGTTGGCTAAAGGGCTTGGAGCTTGGACCTCTAGGCTGATGCATCCTTTCGAAGCTTCCAATGACTCCATAGAGAACCCACCGAAGACCTGGACAAAGTCACGTCTGCAGTGAAAAAGAGTTGTGAATGTTTCTGTCGCTTCTTTGTCTCCTGGGATTGATGATGAAAAACAAACATGACTCAGTCTCAGTTATACTCAGAAGACTTTGATGCAGGTAGTGGCTTTTCTCTCCCAGAGCATAAAATGACATCAGAAGACTGAAATTATGTACTGGAGAAGCCTTTGCTTCTACATACTGGAATGGGATGGTTATGCATACTGGATGAATCTATCTCCCTGACAGCCATGACTGAGTAAATCACAAGCCACTTAAAACTATTACATATGTGCTTAGTTCTTAGAGTAGCGAGGACTGAAGAGTTCTAAAGTCAAAGTCGTGGCCCTGTGTGCTGGTTCTGGGAGCAGCGTTCTGCAGAGTATAGAAGCTGACCTTTACCTCCAGCTGGGTAAAGGTCATCCCAGGTGGGATGTCTCATCATAATATTCTGAATGCTGCTTCCTAAGGAGTAAATGTCATCCTTTATGAACTCAGCAACACTGAATAAGACTTTCTTTCTGACATTTGAGATATACTGGGTGCTTACTTGAAGAGTAAGATTAATATTATCCTTCAGAGACAAGCAAGGACCTTCTTTATGTAGTATAACGCAGATAGGAACATCAGGATGACACAATCTACAAATCG
>NM_001142356.1
AAACTTGAACTTTACCTGATTTCTGTATGTTGTCATCTTGCGTACGCCCAGTCCCCACGACAGTCCGGTTTGTAGATTCCCTGATCTGCAATTCTTCCCGTTCCTTCATGGATTTGAAGGCTCTCCTTTCTTCCTTGAATGACTTTGCATCCCTCTCGTTTGCTGAGAGTTGGGACAATGTTGGATTACTGGTGGAACCAAGCCCACCACATACTGTAAATACACTCTTCCTGACCAATGACCTGACTGAGGAAGTGATGGAGGAGGTGCTGCAAAAGAAGGCAGACCTCATTCTCTCCTACCATCCGCCTATCTTCCGACCCATGAAGCGCATAACCTGGAACACATGGAAGGAGCGCCTGGTGATCCGGGCTCTGGAGAACAGAGTCGGTATCTACTCTCCTCATACAGCCTATGATGCTGCGCCCCAGGGCGTCAACAACTGGTTGGCTAAAGGGCTTGGAGCTTGTACCTCCAGGCCCATACATCCTTCCAAAGCTCCCAACTACCCTACAGAGGGAAACCACCGAGTAGAATTCAACGTTAACTACACCCAAGACCTGGACAAAGTCATGTCTGCAGTGAAAGGAATTGACGGTGTTTCTGTCACTTCTTTTTCTGCTAGGACTGGTAATGAGGAACAAACACGGATTAATCTGAATTGTACTCAGAAGGCTTTGATGCAGGTGGTAGATTTTCTTTCCCGGAACAAACAACTTTATCAGAAGACGGAAATTCTGTCACTGGAGAAGAGTCTCAAGTCAAAGTCGTGGCCCTGTGTGCTGGTTCTGGGAGCAGCGTTCTGCAGGGTGTTGAGGCTGACCTTTACCTCACAGGTGAGATGTCCCATCATGATACTTTGGATGCTGCTTCCCAAGGAATAAATGTCATCCTCTGTGAACACAGCAACACTGAACGAGGCTTTCTTTCTGACCTTCGAGATATGCTGGATTCTCACTTGGAGAATAAGATAAATATTATCCTATCAGAGACTGACAGGGACCCTCTTCAGGTGGTATAATTGCAGAAACATCAGGATAACACATTCTACAAATCAGCTGGATGCCAACTTAAATTTGTAACATGAGTCAGTGGGACTGGTGTGCTTCCAGAGAGTGTCTTCGAGGGTATCATCATTTCCGGTTTGTTAATCTTATTCACCAAATGTTCTATCGCTCGTAAGGTAAAACTGTAATATAACTACCATATTAAATAACAAATGTTCATTATAAACTCTAGGAAAGATTGAATAAAATCTGTTTACTTAACATTCTT

Publications

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