Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RIDAP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:199752451-199752965  UCSC
Coordinates (T2T) chr1:199009467-199009981  UCSC
Coordinates (hg19) chr1:199721579-199722093  UCSC
Strand +
Parental Sequence NM_005836.3
Parental seq. overlap 441 bp
Parental seq. overlap (%) 44.4%
Genomic Region Intergenic
Retrocopy Summary RIDAP1, located on chr1:199752451-199752965, is a retrocopy of the parental gene RIDA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RIDA
Full Name reactive intermediate imine deaminase A homolog
Also known as HRSP12|P14.5|PSP|UK114|hp14.5
Coordinate chr8:98102344-98117171
Strand -
Gene summary Enables 2-iminobutanoate deaminase activity and mRNA binding activity. Involved in mRNA catabolic process; mRNA destabilization; and organonitrogen compound catabolic process. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RIDAP1
Bonobo Pan paniscus RIDAP1
Gorilla Gorilla gorilla RIDAP1
Orangutan Pongo abelii RIDAP1
Gibbon Nomascus leucogenys RIDAP2
Marmoset Callithrix jacchus RIDAP4
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RIDAP1
GTTCTCCTGGAGGGGCCACAAGAGAGAAGGGTTAGCCAGGTCATCCTTAATCAGAAAGGCGATCAGCACCACGAAAGCCCCAGCGGCCATTGGGCCCTACAGTCAAGCTGTGTTAGTCAGGACAAACTTACATTTCAGGACAGATAAGCATGAACCCTTTAAGTGGACAGCTTGTGCCAAGAGGGCTTGTTTAGCAAAAGAAGCTAAGCAAGAACATGAGTAAAATTCTGAAAGCTGCAGGCTGTGACTTCACTAATGCAGTAAAAACAACTGTTTTGTTGGCTGACATAAATGACTTCCCTACTGTCAATGAAATCTACAAACAGTACTTCAAGAGTAGTTTTCCTGCAAGTGCTGCTTACCTGGTTGCTGCTTTGCCCAAAGGAGGCCAAGCTGAAATTGAGGAAGTAACTGACCAAGCACCTCTCACAACGGCATGACTATAAGTGGCCCGGTGTTATTTAGTCTGAAATTTTTCACATCTTGACTTTTACAATTGATATAACATCTTAATT
>NM_005836.3
AGTCCAGTAAGAAGCCAGCAGGGCTGGTGCTGGGGCTTCTTCTCCTGAAGGGGCTGCAAGAGGGAAGGCTTAGCCATGTCGTCCTTGATCAGAAGGGTGATCAGCACCGCGAAAGCCCCAGGGGCCATTGGACCCTACAGTCAAGCTGTATTAGTCGACAGGACCATTTACATTTCAGGACAGATAGGCATGGACCCTTCAAGTGGACAGCTTGTGTCAGGAGGGGTAGCAGAAGAAGCTAAACAAGCTCTTAAAAACATGGGTGAAATTCTGAAAGCTGCAGGCTGTGACTTCACTAACGTGGTGAAAACAACTGTTCTTCTGGCTGACATAAATGACTTCAATACTGTCAATGAAATCTACAAACAGTATTTCAAGAGTAATTTTCCTGCTAGAGCTGCTTACCAAGTTGCTGCTTTACCCAAAGGCAGCCGAATTGAAATTGAAGCAGTAGCTATCCAAGGACCACTGACAACGGCATCACTATAAGTGGGCCCAGTGCTGTGTAGTCTGGAATTGTTAACATTTTAATTTTTACAATTGATGTAACATCTTAATTAACCTTTTAATTTTCACAATTGATGACAGTGTGAGTTTGATGAAAATATCTGAAGCTATTATGGAAATACCATGTAATAGGGAGAGTTGAACATGAATATTAGAGAAGGAATCCAGTTACTTTTTTAAATTACACCTGTGTGCACCTGTATTACTGAATATAGGAAAGAGATACCCATTACATAGTTACTCAGTAAACAAAAGAGAAATACCAGGTAGGAAAGAAGAGTTACTATTCCTGAGAAATAATCAAGAACATATTTAATTTAAACTAATGATGTGAACTATTTAGTTTTGATGTCCGTTATGTGATTCTGCTTTTACTTGAGTAAAATTAAAGTGTTTAAATTTGAGATCAAGGAGAAGATAGTGGAACAAAATGTTATATAGATAATATTTTTCTAATGGAAATAAAATAGGCAGATTTCC

Publications

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