Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC25A39P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:202796237-202797391  UCSC
Coordinates (T2T) chr1:202058881-202060035  UCSC
Coordinates (hg19) chr1:202765365-202766519  UCSC
Strand +
Parental Sequence NM_016016.4
Parental seq. overlap 938 bp
Parental seq. overlap (%) 58.9%
Genomic Region Intragenic (KDM5B)
Retrocopy Summary SLC25A39P1, located on chr1:202796237-202797391, is a retrocopy of the parental gene SLC25A39. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC25A39
Full Name solute carrier family 25 member 39
Also known as CGI-69|CGI69
Coordinate chr17:44319627-44324845
Strand -
Gene summary This gene encodes a member of the SLC25 transporter or mitochondrial carrier family of proteins. Members of this family are encoded by the nuclear genome while their protein products are usually embedded in the inner mitochondrial membrane and exhibit wide-ranging substrate specificity. Although the encoded protein is currently considered an orphan transporter, this protein is related to other carriers known to transport amino acids. This protein may play a role in iron homeostasis. [provided by RefSeq, Mar 2016]

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla SLC25A39P1
Gibbon Nomascus leucogenys SLC25A39P1
Green monkey Chlorocebus sabaeus SLC25A39P1
Baboon Papio anubis SLC25A39P1
Golden snub-nosed monkey Rhinopithecus roxellana SLC25A39P1
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC25A39P1
ATCCTGTACTACAATGGTGTCCTGGAGCCTCTGTACCTATGACCAAATGGTCCCCGCTGTGCCACCTGGTTTTAAGACCCTACCAGCTTCACTGGCACCTTGGATGCCTCTGTGAAGATTCTGAGGCACAAGGGCACCAGGACCCTGTGGAGTGGCCTCCCAGCCACCCTGGTGATGACTGTGCCAGCTACCACCAACTACTTCACTGCCTACAACCAACTCAAGGCCTGCCTGTGTGGCTGAGCCCTTACCTCTACATAACCTTGGTAGCTGGTGTGCTGGTCCACCCTGGCACTATCACTGCAATCATCAGTGCCCTGGAGCTTATGCAGACAAAGCTGCAGGTTTAGCATATGTTATACTATGTGCTGGTACCTGTGTTTGAGCTCCGGTGGCTTAGAGTGGTTGGTGCTCACTGTGGCTGTGCCGGGGCCCCACTCTCCTTAGAAATGTGCCCTTCTCAGCCCTGTACTGGTTCAACTACGAGCTAGTGAAGAGCTGGCTGAATGGGCTCAGGCCAAAGGAACTCCATGGTCCCATGACAACCATAGGAGTCAGCTTTGCAGCTGGCAGCATCACCATGATGCTGGCTACAGTGCTGACCCTAACCTTTGTCGTGATGAAGACTCAACACCAGGCCACACTCGGAGTGATGGAAGCCGTGGAAGTGACATCCCTGGATGCGGACTCTACCTGGTTGCTCAGAGGTGGATCTGTGCCAAGTCGGGCATCAGAGGGCTCTTTGCAGGCTTCCTCCCTTGGATCATCAAGTCTATCCCCTCCTATGCTATCACGATCACCACTTATGAGTTCAGCAAAAGTCTCTTAAAGAGACTCAATCAGGACCAGCATCTGGGCCATTCAAAGGGGCAAGGAGGCAAGGACCCCCATCTCTCCAACAGATGGGGAAAGAGGGGAGGAGGGACTGAACCCCTCAGCCCTGAGGGGAGGATCCTTGTTTCCATTCCCGCTGTGCAACAGCCCCAGGGGTCCAGGGGTAGGCTGCCCCTCTGGGCAGCCCAGGCCATCCTCAGACACAGCTTCCTCCTGCTGCTTCCATCCTGGGGATCATCCATTTCCTACCCTCCAAGTTCAAGACCAAATCTGCTATCTGCCCCTCCCCTATGTTTCCCTCTGTGCTTGCTGTAGCTGGGC
>NM_016016.4
GGCGTCGGCCTAGGTGCGCTGCGAGCGCGCGCGGACCGCGCACAGGCGGCGGAGCCGGTATGGGCCCGCCTGACCCTGGGCGCCGCGCCGCACGAGCACCAGCCTAGAGCCAGGACTGAAGCTTCAAGATGGCTGACCAGGACCCTGCGGGCATCAGCCCCCTCCAGCAAATGGTGGCCTCAGGCACCGGGGCTGTGGTTACCTCTCTCTTCATGACACCCCTGGACGTGGTGAAGGTTCGCCTGCAGTCTCAGCGGCCCTCCATGGCCAGCGAGCTGATGCCTTCCTCCAGACTGTGGAGCCTCTCCTATACCAAATGGAAGTGCCTCCTGTATTGCAATGGTGTCCTGGAGCCTCTGTACCTGTGCCCAAATGGTGCCCGCTGTGCCACCTGGTTTCAAGACCCTACCCGCTTCACTGGCACCATGGATGCCTTCGTGAAGATCGTGAGGCACGAGGGCACCAGGACCCTCTGGAGCGGCCTCCCCGCCACCCTGGTGATGACTGTGCCAGCTACCGCCATCTACTTCACTGCCTATGACCAACTGAAGGCCTTCCTGTGTGGTCGAGCCCTGACCTCTGACCTCTACGCACCCATGGTGGCTGGCGCGCTGGCCCGCCTGGGCACCGTGACTGTGATCAGCCCCCTGGAGCTTATGCGGACAAAGCTGCAGGCTCAGCATGTGTCGTACCGGGAGCTGGGTGCCTGTGTTCGAACTGCAGTGGCTCAGGGTGGCTGGCGCTCACTGTGGCTGGGCTGGGGCCCCACTGCCCTTCGAGATGTGCCCTTCTCAGCCCTGTACTGGTTCAACTATGAGCTGGTGAAGAGCTGGCTCAATGGGTTCAGGCCGAAGGACCAGACTTCTGTGGGCATGAGCTTTGTGGCTGGTGGCATCTCAGGGACGGTGGCTGCAGTGCTGACTCTACCCTTTGACGTGGTAAAGACCCAACGCCAGGTCGCTCTGGGAGCGATGGAGGCTGTGAGAGTGAACCCCCTGCATGTGGACTCCACCTGGCTGCTGCTGCGGAGGATCCGGGCCGAGTCGGGCACCAAGGGACTCTTTGCAGGCTTCCTTCCTCGGATCATCAAGGCTGCCCCCTCCTGTGCCATCATGATCAGCACCTATGAGTTCGGCAAAAGCTTCTTCCAGAGGCTGAACCAGGACCGGCTTCTGGGCGGCTGAAAGGGGCAAGGAGGCAAGGACCCCGTCTCTCCCACGGATGGGGAGAGGGCAGGAGGAGACCCAGCCAAGTGCCTTTTCCTCAGCACTGAGGGAGGGGGCTTGTTTCCCTTCCCTCCCGGCGACAAGCTCCAGGGCAGGGCTGTCCCTCTGGGCGGCCCAGCACTTCCTCAGACACAACTTCTTCCTGCTGCTCCAGTCGTGGGGATCATCACTTACCCACCCCCCAAGTTCAAGACCAAATCTTCCAGCTGCCCCCTTCGTGTTTCCCTGTGTTTGCTGTAGCTGGGCATGTCTCCAGGAACCAAGAAGCCCTCAGCCTGGTGTAGTCTCCCTGACCCTTGTTAATTCCTTAAGTCTAAAGATGATGAACTTC

Publications

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