Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name BPNT2P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:210462540-210462775  UCSC
Coordinates (T2T) chr1:209701189-209701424  UCSC
Coordinates (hg19) chr1:210635884-210636119  UCSC
Strand -
Parental Sequence NM_017813.5
Parental seq. overlap 197 bp
Parental seq. overlap (%) 2.7%
Genomic Region Intragenic (HHAT)
Retrocopy Summary BPNT2P1, located on chr1:210462540-210462775, is a retrocopy of the parental gene BPNT2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name BPNT2
Full Name 3'(2'), 5'-bisphosphate nucleotidase 2
Also known as GPAPP|IMP 3|IMP-3|IMPA3|IMPAD1
Coordinate chr8:56957931-56993867
Strand -
Gene summary This gene encodes a member of the inositol monophosphatase family. The encoded protein is localized to the Golgi apparatus and catalyzes the hydrolysis of phosphoadenosine phosphate (PAP) to adenosine monophosphate (AMP). Mutations in this gene are a cause of GRAPP type chondrodysplasia with joint dislocations, and a pseudogene of this gene is located on the long arm of chromosome 1. [provided by RefSeq, Dec 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes IMPAD1P1
Bonobo Pan paniscus BPNT2P1
Gorilla Gorilla gorilla IMPAD1P1
Orangutan Pongo abelii IMPAD1P1
Gibbon Nomascus leucogenys IMPAD1P1
Green monkey Chlorocebus sabaeus IMPAD1P1
Golden snub-nosed monkey Rhinopithecus roxellana IMPAD1P1
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>BPNT2P1
ACATAAGCCACTTTCTGAATATACAGTTTGGGTGATGGCAGATGGTGGTTCAAATGTGAAAGCCATACATCCTACAAGGAGAAACCCCCAGGAACCGCTGCGTCTTGTTCCCATTCAGAAGTGATCAAACAGGTTCTTCAGACTTTTGGAAATCAGACTACAGTCATACCTGCTGGAAGGGCTAGGAATAAACTTTCAGCATTCTTGGACGTGCCTGATAAAGAGTCAGGAAAAAA
>NM_017813.5
ACCTCGCGGCCGTAGGCTAACGTGGAAGTCGGACCAGCCGGCCGGCGGAAGAACCTAGAGCGCGCTGCCTGGCGAGTCAGGCGCGCGGGGCGGCGTTGGTGGTCTTCGCGGCGCAACTCGGCCTTTCCTGGGAGGGAGTGATGGGGCGCACCGGGGCCGGGGAGCGGGCGCCAGTGTAGCCCGCgcggcgcctggcccggagcgcggcggctgcggcggcggcggcggcggGCGCTGGAGGCCTGTGAGAGCCGCAGCCCGGAGCGCCCGGCTTCCCACGCCATGGCCCCCATGGGCATCCGCCTTTCCCCACTGGGGGTGGCAGTGTTTTGCCTGCTGGGGCTCGGCGTGCTCTACCACCTCTACTCGGGCTTCTTGGCCGGCCGCTTCAGCCTCTTCGGCCTGggcggcgagcctggcggcggcgcggcggggcccgcggccgcggcCGATGGGGGCACCGTGGACTTGCGCGAGATGCTGGCTGTGTCAGTGCTGGCCGCAGTCCGCGGCGGCGACGAGGTGAGGCGCGTCCGCGAGAGCAACGTCCTCCACGAGAAGTCCAAGGGGAAGACGCGCGAGGGAGCCGAGGACAAGATGACCAGCGGCGACGTGCTGTCCAACCGCAAGATGTTCTACCTGCTCAAGACCGCCTTCCCCAGCGTCCAGATTAATACTGAGGAACACGTGGATGCAGCTGATCAGGAGGTTATCTTGTGGGATCATAAGATTCCTGAGGATATCCTAAAGGAAGTAACTACTCCTAAAGAGGTACCAGCAGAAAGTGTTACTGTCTGGATTGACCCACTTGATGCTACACAGGAATATACAGAGGATCTTCGAAAGTACGTCACTACTATGGTGTGTGTGGCTGTAAATGGTAAACCCATGCTAGGAGTTATACATAAGCCATTTTCCGAATATACAGCTTGGGCAATGGTAGATGGTGGTTCAAATGTGAAAGCCCGCTCTTCCTACAATGAGAAGACCCCAAGGATCGTTGTGTCTCGTTCCCATTCAGGGATGGTCAAACAGGTCGCTCTTCAGACTTTTGGAAACCAGACTACAATTATCCCAGCTGGTGGTGCTGGTTATAAAGTTTTAGCACTTTTGGATGTGCCTGATAAGAGTCAAGAAAAAGCTGATTTATACATCCATGTGACATACATCAAAAAGTGGGATATATGTGCTGGTAATGCCATCTTAAAAGCCCTAGGGGGGCATATGACTACCCTGAGTGGTGAAGAAATCAGTTACACTGGTTCAGACGGCATTGAAGGGGGACTCCTTGCTAGCATCAGAATGAACCACCAGGCCCTGGTCAGAAAACTCCCAGATCTAGAAAAGACAGGACATAAATGAGCATAACTGATTACAGGGTACAGTTCTTCACAGCTGAAATGGTTAGCCTGAGATGCTGGAAGCTTCAAAGGATTGGTGGAGACTATGCATGGTTAAGGCCATCCCGAACTTTTTAAAGTATTTATGAAGCATCAGAGACTTATTTTCCCTGTAATAGAATGCAAAATCAGGGAAAATGGGTTGCTTTGTGTCTCAAGTATTGTCTTTATTTTTGAGACTATTTTCATACAGTTGTCATACACAAGGCGCATATATATATTTGTGAATTAAAATCTGTAGCTGAGTCTACATTGTTATGAGTCACCATTTTCACACAACATCATGAATCTTCACTGTTAGTACTTTCATATAGAATTCGGTTGAAGGAAAGATTGATTTTTGTGTAGATGTTTAATATAACTTTACAACTATATCTCATTGAAAATAAAGTCATTGGGGATTTTTACCTCTAATTTGGATGGAAAGCACAAGAAGCCACACATTCATTAATATGCAACAAATGTTGTATTTATGTTACTGAATATTTCTATGGATTAAAATAGAAAAAGTTTAATTGATTTTTTCTTTTAAATTTTAATAACAGGTTCACCAGCTGGTAGAAAATAGAGACACATGATGATTTGCATTGTAATAATTTCtgtgtgtatgtgtgtgtgttgtTTTGTTTTTATAAAGAAAAGTGTGTTTGTACCCATGAGTTCAGCATTTCTGCCATCTTGCTATTTTCATTTTCCCTGTGGAAGATGCATGGTTGCATCCTTTTCCTTCTGACCAACACTTAGTCtttaactttgtaaggttcggtttaaggtttcagggttaGCACTATAGTTTTGGTTCATTTTCTCATTAACGATAAAATATGCTGTAAGGCACTATAAGAATATAAATGATTCTATTACAATTGAAAGTTACTTGACATTACATGAATTGAACTGCCTTTCATTATCTTCAGACACTTTGTTTTAGTATTTTTTTTTAATTTGCTAGGTTTGTATATAGAAGATCCTTTCATTATCAAGAATGAGTATGGTTGCTTTTGCCATGGTTGCTTTTACTATTAATAAATGTATCTAGCCTACCCAAACTCTGTAGTAACTTTTGAGATTCTCTTAATTTCCCCTCAGATTAAAATAGAGAAGGTTGAAGGTACTTTTTGATGAAATTTTTTTCTAGTCTGGTTAGAAAAAAAAAGTTGTGACATATTCATTGTGTTACcgtaactagaaccttgctttgtgaactgtctttcattgggatgtatggtttctctcaatgtgaaatctggaaacttcatgtaaactacccatgccgttatttcatgtgactccagtgcccttgtattccataacatgctgatgAGAGGGATTTCTCACGGTTTCTTTCTTTGCTAAATTTTTTAACCATAAAGCAGCTTACCCTTTATTTTCCCATCTTGGAAGTAAAATTGACCAAAGAATGTACGTTCTAGCCTGGTGGAATGTGCATACTTTAGGTTTGTATGTTACATTGTCCAAAGCCCTTTACTTTCTTATTAGTAAACTGAATCTAATATGACACAAATGTTTTCACCCAATCTCTTGCAACTGGTCAAATTCGAGAAGGTGTTGGGCCTTAGCAGTAGGCCTTTTCAGTGAAAATTCATTCAAAGTTTTGGTAGGTGGAACACTTGATATTTAAATAGGACTTGAAAATTTTGAAAAGAGTATCAGAGACCTCATTTTTTTCCTTTGCAATAAGCTGAAGAAACTTTCTTTTTCAGGAGAGATGGCAAAGGTATATGCTGTTGCCAGAGTCCTGTGGTATAAGCATCTGTTTTTATTATAGTATGTCAAAGTTAGGGAAATGGGACTGGCAAGTAAAAAATGGAATTTAATTTCAATGTTTTATGGGAACTCTGATTTAATGGGAAGCAAACTAGTTCATATTAGCAGGAATTAttttattttttcgagacagagtttcactctcgttggccaggctggagtgcaatggcgtgatctcggctcaccgcaacctctgcttcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatacaccaccacacccagctaatttttttgtatttttgttagagacagggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatccgcccacctcggcctcccaaagtgatgATTTTATTTTTATTTTTAATTGTATTAATCTGCATCTAGATAATGACTTTGTGAAGGGTGTGTGTTGTGTGCAAAACTTAAGGTATTGGTTGAGAGTTAAATACATTATTTTTATAATATGTTGGGTATAGTCTAGTTACTAATGATTTTTTTTAAGTACTTTTATAAAAAGTTCATTTTTAAAATTGTTTGTTTTTAAAAGCCAATATACGTTGCAGAATTAGGAACAGTATTTATATTTATTTACACAAGACATTGTGCCATAGCATCCTAGTAAAACACCTTCATGAATGAGTAATGTTATCTCCCAGAATTACATTAAAATTATTTCTAAAAAGTAGCAAAGTCATTACCTTTTGCTTTTAATGACCCACACCTCACCAGCTCCTGGTCTTTTCTTCACTGTTGCCCTTATTTTGAGGCAATTTTTCTTAAAATATGACTTTTATGCACCACATTTAGTAGAGGCAGTGACATCAGTGATCTCAGTACCCATCAGCTGTCCCCCTCCTCTGCCCTTCTTCATCTCTTCTACCTTGTGACCATTTCCCTTACCGGTTCATGTTCTCCTTTATCTCTGCTTTTCTTTCTTAGCCAGGATACTTCCCTCACAACTCTCACTCCCAAATTCTTTTAGATATACATTTTTCTGGATATTGGCTGCTGAAATCTGAAGCTCTGGTAAAGTTCCTAGTATCAGAGATCAATCCTGGAGGAGGCCTAGTTCACTATTAGATTACAAAGACTCCTCACAAAGTAAAGGAAAATCACCTTCAAAACCACAACCCTTTATGTTGTCAAGTCTAATATGAGTGTTTTTACGAAGTATTTCTTTCTACCCATTGTTCAAGAATGTAAATGTAAAAAAAAATACAAGAGAGTTGGGTAGATATGCATGCTTGAGGAAACTTGCTTTTACTGTTTTCCTACTTGTATCCCCAGTTCAGTTGAATTTACAAGGACCTACAAGATGGTCATGTTTGTCTTGGTATGTGCTACCCCAATTTTAGTGTTTCTTTCTTTATTTTAAATCAGTAATTATTCAGTTGATTGTTTATACTATATAATGAAGTAACAAAAACATTTTGGTTTGTATGTTTTAAGTAACAGTTGTGCAAATTCCTCTTGTTTGTTAGGTGCTCCCTTTGAATATTTTGTGAACTGTGTCAGAGGGAGAGGGGTGGTGGCTAGGAAGAGGGTCAGAAAGAAGCTAGAGGGAGGTCAGGAGAAGGGTAACAGGGAGGATGCAAAGCAGACATCTACCCTGGTCACCCCAGGATCAGGATATCTGTCCTTGTTTCATGTTGAATTCAAAAATTGGATCTCACTTAGGCTTTGAAGGTGACAGCCATCTCTGATAGCTGAGCATAAGTAAAGAAAGGTGGAGTGCCGATGCAGAAAGGAAAATATTCAGCTTTCCTCTCTTAGATCGCACTTTGAAGATGGCCTTTTGGAGACAATCTGACAGGTTAAAACAGGAACTGTTGGAATTATTCTAGCTGTAACTACCTATTGGCTATGTGTTGATTGATCCTAGAAAGAAAAAATAATTTTTCATTTTAGATCTTGATTGAATTTAAGATGTATTTATATGCCTACAAAAGGTCTGTCTTGTAACTGTTGTATAAAATAAACCTAATCTATGGTTTCATTTTTAATCTAAAAAAAGTTGTGCCTTAACAATAGGGCATTGTATGTTAATAAGGGAAAACAACCTTTTTAGTAGATGGGGGAAAATAGGAACTTTTTGCCATTAAAACTTAAGTTCTTTTGATGTTTTTAATATTATAGTTGGGGGAGATTCATTAAAATTAAATTGAAATAAAATTATTTTTGCATAACCTAGCATTTACAACTAAAGTATGTTTTTTATAAGAACTGGCATCTTGATGTATATAGGTCTGAAATAATATTTCATCTTTTGATTTTTAATTTTAATAATATTAGACCAGGATAGATCACAGTTTTACAAATCTTAGTTTTAAATAAATTATTTCAGTGTGCTGTTAGTCCTCTACAGTCATTTTGGTTTAAAAAGTGACTATTTATTTATGGTAGCATATCAATAATTTATTAATGTTAAAAAATACTGTGTATGACATTACAAACCAGAACAGTTCCTGGGGGAGAGGATTCTAATTGATTGGCAGTTCTGAGAGGGCAAGAAGAATGGAACTTTATACTTCAAAAGGAGGTTTTGGTTTTACCAGGTACTGCTTATGTAAATCGTTTATTTTTATTTCATCAAAGCCTGGCAAGTATATGCATTCCAATTTACCATTGGCAAAGCTTTATTTATTTTTAAGGTTGGATGTTGAATTAATTTTGTGGGAAAATGAGATTTGTAAGTAGTTTTCTTTCTAGATAAGATAACATAAACCAAACTTTCAGAAGTTAAGGATGATGAATAATATTGAAATGACTTGTTATATATTGTAAGGGTTCCCTTAAGTATCATAATTAACAATTTGTGGAAATTGAAAAAGCATAAACTGTGTTATTTGATTAGTAATATGTTCCCTTAAAATTCATTTTGAGGTGTATGTTATACACACAGTAAATTTTTGTTCAGGAATGACTTGCTCATTCTGTGTTTTTAAAAATAGGAAATAAGGCATAGTGAGTCATCATTACATCAATTAACCAAAAAATATTTCATCCCCTCCGTCACTGAAATTATCTACTTCAGCCACCTTTCTTATTCTCGTGTTAGGAGGGCACGTTTATGGACTTTTTAATTTCCATGTGCCATATTGTCCACTACCGGCAGTAGCCAAAGCTAGCTGTTTCAGTCCCACAGAAGAGACAGTGCTCTGCCATGATGACAGGGCACTGCTAGGGCTGGTTTTTCTTGTTTTTCCCTTTTGGCAGTGTGGACTTCAGGAACTAGATGTATATGCACAAGGGATTGAGTTTACACTAAAACTAGGAAATGGAGTTTTCAATCTATGTTCTTGCCTCTTCATACTTTTATTTATTTTTTGTCATCCTGCCTTATACTGGGCTAACAATGAGATAAAATAAAAATACCTTTGAATACTCTTTTCCCTTTCATGCATTTAAAGCCATGGAGGAACTAGACCATTAGCTGTTGCCGTCACATGCTTAGACACCAGTTTACTTAGCGTGTTATGACCTTCCTCACCCATACTACCAAATTTAAATGGGTCCCGACTTCACCCTCTGGAAGGAAGTAAACTCTTCTCTCCCCATGGTTTCAGAGCAGTTTTTACCTGCAAGCACcatctctgtatgtgctcttactagattatacagttcttgagagggattgcatcttagtgtttttgtatttccacctcacccccagcacatagcccagtctcttgcacaaattaagtacttaatgtgtgttgagctaaattgaatAAAGGATTATTAGCATTAGCATATTTTGTGCCTTGGTTGTATAAGCTGGTTGTTTGTTTTGTTACCTTTGCAAATATTTATGATTATCACCCCCCCACATACTAAATTGTTTTTAAAAGTTTTGCCTTTCCTTCAGATACTACCCCAGGCAATTTGCTGTAGATAATGTGATTGCTTCCAATGACATAATTATCCCAAACTCTCTGCCCCGGATATACTTTGCCAAACGAAATTTGAATTCTCTGAATAAATTGGTCATGTCTAAAAGA

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