Summary

Retrocopy Name	APOBEC3FP1
Species	Homo sapiens
Coordinates (hg38)	chr12:108282032-108282235  UCSC
Coordinates (T2T)	chr12:108250254-108250457  UCSC
Coordinates (hg19)	chr12:108675809-108676012  UCSC
Strand	-
Parental Sequence	XM_017028642.2
Parental seq. overlap	169 bp
Parental seq. overlap (%)	4.7%
Genomic Region	Intergenic
Retrocopy Summary	APOBEC3FP1, located on chr12:108282032-108282235, is a retrocopy of the parental gene APOBEC3F. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	APOBEC3F
Full Name	apolipoprotein B mRNA editing enzyme catalytic subunit 3F
Also known as	A3F|ARP8|BK150C2.4.MRNA|KA6
Coordinate	chr22:39019081-39055972
Strand	+
Gene summary	This gene is a member of the cytidine deaminase gene family. It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22. Members of the cluster encode proteins that are structurally and functionally related to the C to U RNA-editing cytidine deaminase APOBEC1. It is thought that the proteins may be RNA editing enzymes and have roles in growth or cell cycle control. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

Homology

	Species	Scientific Name	Retrocopy
	Gibbon	Nomascus leucogenys	APOBEC3DP1
	Green monkey	Chlorocebus sabaeus	APOBEC3GP1
	Chimpanzee	Pan troglodytes	Without Homology
	Bonobo	Pan paniscus	Without Homology
	Gorilla	Gorilla gorilla	Without Homology
	Orangutan	Pongo abelii	Without Homology
	Crab-eating macaque	Macaca fascicularis	Without Homology
	Rhesus	Macaca mulatta	Without Homology
	Baboon	Papio anubis	Without Homology
	Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
	Marmoset	Callithrix jacchus	Without Homology
	Mouse lemur	Microcebus murinus	Without Homology
	Mouse	Mus musculus	Without Homology
	Rat	Rattus norvegicus	Without Homology
	Chinese hamster	Cricetulus griseus	Without Homology
	Rabbit	Oryctolagus cuniculus	Without Homology
	Pig	Sus scrofa	Without Homology
	Cow	Bos taurus	Without Homology
	Sheep	Ovis aries	Without Homology
	Dolphin	Tursiops truncatus	Without Homology
	Horse	Equus caballus	Without Homology
	Dog	Canis familiaris	Without Homology
	Panda	Ailuropoda melanoleuca	Without Homology
	Cat	Felis catus	Without Homology
	Pale spear-nosed bat	Phyllostomus discolor	Without Homology
	Velvety free-tailed bat	Molossus molossus	Without Homology
	Greater mouse-eared bat	Myotis myotis	Without Homology
	Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
	Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
	Egyptian rousette	Rousettus aegyptiacus	Without Homology
	Sloth	Choloepus didactylus	Without Homology
	Tasmanian Devil	Sarcophilus harrisii	Without Homology
	Opossum	Monodelphis domestica	Without Homology
	Platypus	Ornithorhynchus anatinus	Without Homology
	Chicken	Gallus gallus	Without Homology
	Turkey	Meleagris gallopavo	Without Homology
	Zebra Finch	Taeniopygia guttata	Without Homology
	Budgerigar	Melopsittacus undulatus	Without Homology
	Painted Turtle	Chrysemys picta	Without Homology
	Lizard	Anolis Carolinensis	Without Homology
	Frog	Xenopus tropicalis	Without Homology
	Zebrafish	Danio rerio	Without Homology
	Drosophila	Drosophila melanogaster	Without Homology

Expression

This retrocopy transcript is not present in the GTEx database for expression quantification.

This retrocopy transcript is not present in the ARCHS4 database for expression quantification

Related Sequence

>APOBEC3FP1

ATGAAGCCTCAGATCAGAAACCTGATGGAGTGGATGTATCCAGGCACATTCTACTACAACTTTGAAAACAGACCCATCCTCTCAGGTTGGAACACCACCTGGCTGTGCTACAAAATGAAAACAAAGAAGGACCCCTCAAAGCCCCCTTTGGACGCAAGGATCTTTGGAGGCCAGGTCTATTCCAAGCCTGAACACCACCCAGAG

>XM_017028642.2

ttcatcctatgaattgggtcattcatgtcctacccagctaaaacagaggccaggagccagggaggaaaagcagtcaggccacacaacattgtttccgaaatggacttctctgcaagcctgactcctgagactgtgcattgtaccctgaaaccagctttatccatagcttctgcgataaatggctgtaagtcttggactccttgctccaaacgcagcgactcagcaatagaacctcccagctcccagcccttcctagtgcccatgggctttacatagggcaagagaacatttctccttctataattgccatctctttgctctctcaacatggtgaacaccatccggactccgtgtatgtctcaaattacaattctttctttgcaaatgaaatatgaaatttagaggctcttctaaacactttaaatttgatttgacaTTTTCAAAGCAGATGTAAGTTTTAGAGAATGAGATTCTCCATAAAAATGACCCTTTCAtgctgtggcctccatagaagatgtcccaggccaggtgcccacatggcaggcatttattttctcacagatctggaagctgcaggtccaacttcgaggggtgggtggggttgtttcctctgaggccgctccttctggctggcagggagtctcttccagccgtgtcctctgtggcctttcctctatgCACACGCACCTCTGGGATCtctctgcctccaaatatcatcttttttttttttttttttttttttgagacagagtgttgctcctcttgtccaggctggaatgcaatggcacaatctggactcactgcaacctccgcctcccgagtttaagcgattcttctgcttcagcctcccgagtaaaaggcatgcatcaccacacctggttaattttgtagttttagtagagatggggtctcaccatgttggccagactggtctcgaactcctgacctcaggtgatccgcctgtctcagcctctccaagtgctgggattacaggcatcagccactatgcccggctgggatcatatgttccacacatgtttgttcaataagcatggactgcaaccacctacatgaatattcatagctcctcctgtagcctgttgaatatgtatgtttagccaacctcttcagcataaagctcctgcccaaacccctcctgctcctaaatgtctgtctctggtgttaaccagaggctgctcttcccaggctgctggatggctaccttgcaggctgtcacccttaacaagaaataaagtgtcctttgcaaatGCATCCCTTGTGTAATTTGTAGGTCACCGCGCCATGGGAACACGCTACCATGGGAAGGGAGCTGTGAGACGCGCAGGGAGGCTCCAGACAGGCTGGCCTGGGACACCAGCCGCTGCCCTTCCATAACATGGGGACAAGAGAGGGCAAAAGTTCAGCCCAACACGGAGGATCTTCGGGCAGGAGATGGGGAAGAAGGAGAAGCAGGAAGGAAAGAGCTCAGTGTGGGGGCGCGCATGGCATCCCGGTGGGACATCTGAGGCCCACACCCACCTGCTGTCCCTCCCTCCCACGGTGGCCACCGAGGGTGAAGGCCTGGGGGGAGGCAGACGCCTGGCCCTTTACTCTCCCTCCCTGTCCCCATGGCCGCTGGGTGGGGGCCGTCTCTGGGATGATCCCCGAGGGCAGGATCCGGGAGTCCCTGCAGAGGCATCAGCCTGTCTGTCTTGATGGTGGAGTGGCGGCTCCAGCTGGGCGGGACCACCAGGGGAGGGGCTTGTGCTCTGCTGGCTCAGCCTGGTGTGGACCCACCTCCCGGGCGCTGGCTGCAATGACTTTCTCTTTCCCTTTGCAATTGCCTTGGGTCCTGCCGCACAGAGCGGCCTGTCTTTATCAGAGGTCCCTCTGCCAGGGGGAGGGCCCCAGAGAAAACCAGAAAGAGGGTGAGAGACTGAGGAAGATAAAGCGTCCCAGGGCCTCCTACACCAGCGCCTGAGCAGGAAGGGGGAGGGGCCATGACTACGAGGCCCTGGGAGGTCACTTTAGGGAGGGCTGTCCTGAAACCTGGAGCCTGGAGCAGAAAGTGAAACCCTGGTGCTCCAGACAAAGATCTTAGTCGGGACTAGCCGGCCAAGGATGAAGCCTCACTTCAGAAACACAGTGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACCCATCCTTTCTCGTCGGAATACCGTCTGGCTGTGCTACGAAGTGAAAACAAAGGGTCCCTCAAGGCCCCGTTTGGACGCAAAGATCTTTCGAGGCCAGGTGTATTCCCAGCCTGAGCACCACGCAGAAATGTGCTTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCTTACAAGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATTCCTGGCTGAGCACCCCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCTACTACTACTGGGAAAGAGATTACCGAAGGGCGCTCTGCAGGCTGAGTCAGGCAGGGGCCCGCGTGAAGATTATGGACGAtgaagAATTTGCATACTGCTGGGAAAACTTTGTGTACAGTGAAGGTCAGCCATTCATGCCTTGGTACAAATTCGATGACAATTATGCATTCCTGCACCGCACGCTAAAGGAGATTCTCAGAGCAACCTCCATCCACCTTCGAGGCCGCCCTCCCCACAGCCTGGGATCCCCAACCTGGCTCCTTCCATCTCCCTGGCATAATCGAATTTGTCATAAAACTGGACGTAAGTGGGCATGAATATTCACAAGGCCGACAGCCAGAAGCTTTGAGCAACATCCTTCAAGGCCGACCTGAGTCCCTGAGAAGGAGCAGCCTCTGTGGAAACTTCAGGCTTCgactgccatagaagatgcccccgggccgggtgcccacagggcaggcatttattttctcacagatctggaggctgcaagtccaaggtggaggggtgggcggggttgtgtcttctgcagctgctcctcttggctggcagggggtcccttccagccctgtcctctctggcctttcctctgtgcacctgcacccctggggtctctctgcctctaaatgtcctcctcgtttatggaccccagtcagacaggattagggcccaccctaagggccatgagttaatttaatcaccactttagtggacctgtctccaaatacagttatcctgtgaggaggtggggatgagggtttcaacatatcaatgtggggaagatacaatttagtccatgacaATGGGTCAAGCTTGCGTGGGGCATGCAGGGGTCCCTGTTCTGTGTGTCTGTCTCCCAGGCGAGTCCTGCCCTGACTCTCACAGCCCCTCCCTCCAGACCTTGCTGCACCCTGGGCCCCACCCCATGGCTTCCCCACCCAACAGCACCCAGCCCGGCCTCTGCTCACGCCTGTCCCTTCTCAAATCTGCCCCCAACAGGGATGGAGATGCAGAAAGAGCCAAACAAACACTCAGTGATCAAGGTCCCAATTGAATAAGAttttttttttttttttgagacactgtctccctctgtcgcccaggctggagtgctatggtgcgatc

Publications

PMID - Link	Title
No publications available for this retrocopy