Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name NXNP1
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Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:218881366-218882590  UCSC
Coordinates (T2T) chr1:218116058-218117282  UCSC
Coordinates (hg19) chr1:219054708-219055932  UCSC
Strand -
Parental Sequence NM_022463.5_3
Parental seq. overlap 1033 bp
Parental seq. overlap (%) 33.7%
Genomic Region Intergenic
Retrocopy Summary NXNP1, located on chr1:218881366-218882590, is a retrocopy of the parental gene NXN. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NXN
Full Name nucleoredoxin
Also known as NRX|RRS2|TRG-4
Coordinate chr17:799310-979776
Strand -
Gene summary This gene encodes a member of the thioredoxin superfamily, a group of small, multifunctional redox-active proteins. Members of this family are characterized by a conserved active motif called the thioredoxin fold that catalyzes disulfide bond formation and isomerization. The encoded protein acts a redox-dependent regulator of the Wnt signaling pathway and is involved in cell growth and differentiation. [provided by RefSeq, Sep 2015]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NXNP1
Bonobo Pan paniscus NXNP1
Gorilla Gorilla gorilla NXNP1
Orangutan Pongo abelii NXNP1
Gibbon Nomascus leucogenys NXNP1
Green monkey Chlorocebus sabaeus NXNP1
Crab-eating macaque Macaca fascicularis NXNP1
Rhesus Macaca mulatta NXNP1
Baboon Papio anubis NXNP1
Golden snub-nosed monkey Rhinopithecus roxellana NXNP1
Marmoset Callithrix jacchus NXNP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Adipose SubcutaneousMuscle SkeletalArtery TibialArtery CoronaryHeart Atrial AppendageAdipose VisceralUterusVaginaBreast Mammary TissueSkin Not Sun ExposedMinor Salivary GlandBrain CortexAdrenal GlandThyroidLungSpleenPancreasEsophagus MuscularisEsophagus MucosaEsophagus Gastroesophageal JunctionStomachColon SigmoidSmall Intestine Terminal IleumColon TransverseProstateTestisNerve TibialSkin Sun ExposedHeart Left VentricleBrain CerebellumWhole BloodArtery AortaPituitaryBrain Frontal CortexBrain CaudateBrain Nucleus AccumbensBrain PutamenBrain HypothalamusBrain Spinal CordBrain HippocampusBrain Anterior Cingulate CortexOvaryBrain Cerebellar HemisphereLiverBrain Substantia NigraKidney CortexBrain AmygdalaCervix EctocervixFallopian TubeCervix EndocervixBladderKidney Medulla00.050.10.15
log10(TPM+1)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

AdiposeBone MarrowBreast Mammary TissueBrain CerebellumColonColon Colonic MucosaEsophagusHeartHeart VentricleKidneyLiverBrain MidbrainOvaryPancreasBrain PonsKidney CortexEye RetinaMuscle SkeletalSkinSmall IntestineBrain Spinal CordSpleenTestisThymusTracheaHeart ValveMuscle Smooth00.511.52
log10(TPM+1)

Related Sequence

>NXNP1
GACCAGTGGCAGTGGTAGGACTTCATGTGGGACATGACTTGGCTGGCGCTGCCCTACAAGGAGAAGCACAGAAACTTTGGAACAAATACCAAATTTCCAATATTCCATTGCTAATATTCGTAGATGCCACCACTGCAAAGGTTGTGGGCAAGAATGGGCTGCTGGTGATCTGAGATGACCCAGAAGGTATGGAATTCCCTTGGGGACCTAACCTTTTCAGGTTTATGAAATGACTCACAGTTCTTGGAGAGCAGCATCCCAGAAAGGCCTTACATAGGACCCTATTTCTCTGCACATGGGTGTTCATCCTGCCAAAGCCTCACCCAGGTCCTGGTGGAATCTTATTAGAAGATCAAGGAGGCAGGCCAGAACTTTGAGATTATCTTAGTCAGTGAAGACAGATCAGAGAGTCCTTCAAACAGTACTTCAGTGATAGGTTCTGGCTCACTAACCCCCATACTGAAAAGGCCTGGAAGTCGCACCCCATCTGGCTGTATAGAATCCAAGGCATTCCCCATGCTCATTGTGCTGGGCCCACAGGGTGAGGTGATCATGTGGCGGGGTGAGTGGAGGTGCTTAACGACGAGGACTGCTGGGAGTTCCCGTGGCACCCAAGCCCGTGCTGAAGCTCTCTGACTCCAACACTTTGCAGCTCAACTGGCCCCTGCCTCCTCCTTTTTGTAGACTCTGAGGATGACAGAGAGTCCCAGGAAGCCAAGCAGCTGATTCAGCCAATAGCTGAGAAAATCATTGCCAAGTGCAAAGCCAAAGAGGAGGAGCATCACTTCCATTTTTTGTATCTGGGGAGGATGATATGATAGACTTCCTGCAAGGTTACACCAACCTGCCTGAGGCTGCCCCTTTGCTCACTATCCTGGACATGTCATCACTGATGGAGTATGTGATGGACGTGGAAGAAGATCACCCCTGCCATTGTGGAGGCCTTTGTGAATAACTTCCTGGCAGAAAAGCTCAATCCAGAGCCCATCTAATGGAGCTCCGGCCTTCTGAGATGTTGTTTAGAATTCAGTCTTCTCCTCCCCTTTCTTCCCTCCACCCTTCGACTTATCCAGTGTGTCCTGAATCACACAACCCAAGTGTCCAACCTCTCTGTGGTGCCTTGCTTCTGCATTCACTACCCAGCTAGCATCCTGGGGTGAGTGTCCTCTCAGTAGCAGCAGAATCCACCATGTTTGGAGACTCTGCTTGGGATCACGAGATGGCA
>NM_022463.5_3
GCTCTCCCCAGcgcctgccgccgacgccgccgcctcctcccgccgcgcggaccgtggagcggggtcgcagccgcctgcccgccCTGCGGTGGGCCAGGATGTCGGGCTTCCTGGAGGAGCTGCTCGGCGAGAAGCTGGTGACGGGCGGCGGCGAGGAGGTGGACGTGCACTCGCTGGGCGCCCGCGGCATCTCGCTGCTGGGTCTCTACTTCGGCTGCAGCCTCAGCGCCCCCTGCGCGCAGCTCAGCGCCAGCCTGGCCGCCTTCTACGGGCGCCTGCggggggacgcggcggccgggccggggccgggagcgggggccggggcggcggcggagcccgagccgcggcggCGCCTGGAGATCGTCTTCGTGTCCTCGGACCAGGACCAGCGGCAGTGGCAGGACTTCGTGCGGGACATGCCGTGGCTGGCGCTGCCCTACAAGGAGAAGCACAGGAAGCTCAAACTTTGGAACAAATACCGAATTTCCAACATTCCATCACTAATATTCCTCGACGCCACCACTGGGAAGGTTGTGTGCAGGAACGGGCTGCTGGTGATCCGAGATGACCCAGAAGGTCTGGAGTTCCCCTGGGGACCGAAACCCTTCAGGGAAGTCATTGCAGGGCCCTTGCTTAGAAACAATGGGCAGTCTCTGGAGAGCAGCAGCCTGGAGGGGTCTCACGTGGGCGTCTATTTCTCCGCACATTGGTGTCCGCCCTGCCGAAGCCTCACCCGGGTCCTGGTGGAATCCTACCGGAAGATCAAGGAGGCAGGCCAGAACTTCGAGATCATCTTCGTTAGTGCAGACAGGTCGGAGGAGTCCTTCAAACAGTACTTCAGTGAGATGCCCTGGCTCGCCGTCCCCTACACGGATGAGGCCCGGCGGTCGCGCCTCAACCGGCTGTACGGAATCCAAGGCATCCCCACGCTCATCATGCTGGACCCGCAGGGCGAGGTGATCACGCGGCAGGGGCGGGTGGAGGTGCTGAACGACGAGGACTGCCGGGAGTTCCCCTGGCACCCCAAGCCCGTGCTGGAGCTCTCCGACTCCAACGCCGCGCAGCTTAACGAGGGCCCCTGCCTCGTCCTTTTTGTAGATTCTGAGGATGACGGAGAGTCCGAGGCGGCCAAGCAGCTGATTCAGCCGATAGCTGAGAAAATCATTGCCAAGTACAAAGCCAAAGAGGAGGAGGCACCCCTTCTGTTCTTCGTAGCCGGGGAGGATGACATGACTGACTCCCTGCGAGATTACACCAACCTGCCTGAGGCTGCCCCTTTGCTCACCATCCTGGACATGTCAGCCCGGGCCAAGTACGTGATGGACGTGGAGGAGATCACCCCCGCCATCGTGGAGGCCTTTGTGAATGACTTCCTAGCAGAGAAGCTCAAACCGGAGCCCATCTAGCGTGGCTCCGGCCTCCTGAGACGTTATTTAAAACTCAGccttctcctcctccccctccttcctTCCGCCCTTGGACTTACCCAGCGTGCCCCGAATCCCACCACCCAAGTGTCCAGCCTCTCTGTGGTGCCTTGTTTCTGCAGTAAACTCCTCAGCCAGCACCCTGGGGTGTGGAATCAGCAGCGGCAGAGTCCACCGTGTTTGGAGACTCTGTTTGGGAGCACGGGATGGCCGGGGGCCCGGCCAGAGCGGGGCTGCATGGCTTTCGCAAAGTCACTAGCTTTTGGTGAAGGATCTGCCAGGGTGTCCTGGGCAGAGTGAGCGTGGAGGGCCGGTGGGTCCCGCTCGGGCTCTGACTCTGACGTCGGCACACACGGCCCCGGACGGCCAGAGGGGAACCGCCGGGTGACACCTGCGTGGAGGCTGAGCTGAGAAAGGGCCTCCGCTTAGAGCTGCGGGTGAGGACGTCCTTTTCTAAGCAACACAGTCTTCCTCGGTCTGAGAGAAAAGCAGCCCACTCTTGTGTTCTCAGGCAGGGGATCTCCAAATGCAAAAGGAAGCTTGTAGAGGTTTTTTGGGTGAGAAGAAAAATGTAGCTAAGGTAATGGTTCATATCATACAAACAGCTCCCACGATCCTGAAATTCTGTTAACGAATCCTTCTCTTTGGACATCTTCCCAAGAAACTTAGCCCTGAGTCCTAGGAGGAGCACCTCTGCACCAGCACGGACCTCTCGCTCCACCCAGCTCTGTGCCCAAGGCCCCTGATCTCTGCTGAGGTGCCCACACCCACGTTCGATCACCCCTGCCATTCCCttttattttcttttttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcaccatcttggctcacttcaacctccgcccccaaggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccgtacctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccgccgtgcccggccCCCTTTTCTTTTCAAAGCAGAACTACAAAGATGAGAAATTACCAGAAGCCTCGCCTTTTCCTAAGCACCAGCGGAAGGAGCTGTGCCCCGGGATGGAGTGAGGGTGGAGGGCGCGTCAGCCACGGGTGGGCCTTGTGTCGCCTTGTATCGGCCCAGGTAGGTTGTTGGCCTCTTACTTGGGCTGACCTGACCCCCGAAAGAGAAACAGACAACTCTGTTCTCAGGATTGGGGATGGACGGCTTCGGCCAAGCGTTTTAGCCTCATTCACTCAGGCCCCACTCAGCACTCTGCCAGCCAAGACCATTGATTTGGAAAATCCGGTCCCCACCCGCTAATGAGCTGTTGACACTGTTGTTCCTTGCTGAATTGGATTGTTGACTTGTAGTTCAGAGGCGTACAACTAGTTGGCGATTAGACTTGTTATGTGATGTTACCAGCCTGAAATGCGATCACCCCGTAGGAAATAAAGCAGGCATCTCTGGACCTCATCCACCCTGGGCCTCTGCTGTCCTTGATCACAAAA

Publications

PMID - Link Title
No publications available for this retrocopy